Gene detail

Detail information of GWHGAAZE031531

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264721.1	0	PREDICTED: 3-ketoacyl-CoA synthase 1 [Vitis vinifera]
COG	YP_002488003.1	1E-21	Naringenin-chalcone synthase
Swissprot	tr\|Q9MAM3\|KCS1_ARATH	0	3-ketoacyl-CoA synthase 1
trEMBL	tr\|F6I2X3\|F6I2X3_VITVI	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G01120.1	0	3-ketoacyl-CoA synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60421001	60423697	+
GWHAAZE00000009	mRNA	60421001	60423697	+
GWHAAZE00000009	exon	60421001	60421655	+
GWHAAZE00000009	exon	60423174	60423697	+
GWHAAZE00000009	CDS	60421001	60421655	+
GWHAAZE00000009	CDS	60423174	60423697	+

Transcript Sequence
>GWHTAAZE031567 ATGGCAGTCGACTCCTTCTTAAAAATGACCGAAGAAAACGGTTCATTTGAGGATGAAACGGTTCAGTTCCAAAAACGGATCTCAAGCCGGTCCGGTTTAGGAGATGAAACGTATTTACCAAAAGGGATTACCTCAAACCCGCCAAATTTGTGCATGAAAGAAGCCCGGTCCGAGGCAGAGGCAGTCATGTTTGGGGCACTCGACTCGCTTTTCAAGAAAACCGGAATTAAACCGAATGATATAAGCATTCTTATAGTGAACTGTAGCTTATTTAATCCCACCCCTTCTCTCTCATCAATGATCGTGAATCATTATAAGCTCCGACCTGACATTAAGAGCTATAATTTGGGCGGTATGGGTTGCAGTGCGGGTCTTATATCTATTGATTTGGCTAAGCTCCTACTTTCGGCTAATCCAAACACGTATGCCGTTGTTGTTAGTACCGAAAATATAACTTTGAATTGGTATTTTGGAAATGACCGGTCCATGCTTTTGTGCAATTGTATTTTTCGTATGGGTGGAGCCGCAATGCTTCTGTCCAACAAGGGTCGGGACCGGGCTAGGTCCAAGTATCAGCTGGTCCATACGGTTCGAACCCATAAAGGTGCTGATGACAATAGCTACAACTGTGTTTATCAGAGAGAGGATGACAAAGGTACAATTGGGGTGTCACTTGCACGCGAATTGATGGCGGTAGCCGGGGATGCATTAAAGACCAATATAACCACACTAGGACCACTGGTGTTACCATTTTCCGAGCAATTCATGTTTTTTGTAACATTGGTAAAGAAAAAATTATTCAAAGCCAAAGTGAAGCCATACATACCGAATTTCAAGCTCGCTTTCGATCATTTCTGCATCCATGCGGGCGGACGGGCCGTTTTGGACGAGATCCAAAAGAATTTACAGCTCACTGAGTGGCACATGGAACCTTCAAGAATGACTCTCCACAGATTTGGAAATACCTCTAGTAGTTCATTGTGGTACGAATTATCTTACGCTGAGGCTAAAGGCCGGGTTTCAAAAGGTGATCGAGTTTGGCAAATAGCGTTTGGGTCTGGTTTTAAGTGTAACAGTGCTGTTTGGAAGGCTTTACGGGCGATTCCAGCCCGTGAGCCAATGGGTAATCCCTGGATTGACTCGATAGACCGATACCCGGTCAAGGTCCCTATTGCATAA

Network for GWHGAAZE031531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	3	266	6.50E-130
PF08541.11	ACP_syn_III_C	282	363	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.919
	SRR3591706	second leaf	9.663
	SRR3591707	mature leaf	8.436
	SRR3591708	Shoot apex	13.955
	SRR3591709	Stem	3.675
	SRR3591710	White floral bud	17.469
	SRR3591711	White flower	14.006
	SRR3591712	Green floral bud	51.459
	SRR3591713	Yellow flower	8.396
SRP173429	SRR8316895	Juvenile bud stage	32.037
	SRR8316896	Juvenile bud stage	43.263
	SRR8316897	Juvenile bud stage	19.959
	SRR8316894	Third green stage	23.933
	SRR8316900	Third green stage	83.756
	SRR8316901	Third green stage	89.619
	SRR8316898	Complete white stage	16.217
	SRR8316899	Complete white stage	110.454
	SRR8316903	Complete white stage	16.940
	SRR8316902	Silver flowering stage	7.638
	SRR8316904	Silver flowering stage	13.880
	SRR8316905	Silver flowering stage	3.472
	SRR8316906	Gold flowering stage	40.424
	SRR8316907	Gold flowering stage	15.942
	SRR8316908	Gold flowering stage	65.280
SRP132670	SRR6706286	Control	68.881
	SRR6706287	Light intensity 50%	72.766
	SRR6706288	Light intensity 20%	80.855
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	88.289
	CNS0095593	Slightly white alabastrum(diploid) 2	77.576
	CNS0095594	Slightly white alabastrum(diploid) 3	55.043
	CNS0095595	Whole white alabastrum(diploid) 2	61.590
	CNS0095596	Whole white alabastrum(diploid) 3	47.544
	CNS0095597	Whole white alabastrum(diploid) 4	41.484
	CNS0095598	Silvery flower (diploied) 1	27.140
	CNS0095599	Silvery flower (diploied) 2	42.592
	CNS0095600	Silvery flower (diploied) 3	26.770
	CNS0095601	Golden flower (diploid) 1	10.817
	CNS0095602	Golden flower (diploid) 2	15.351
	CNS0095603	Golden flower (diploid) 3	14.993
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	154.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.538
	CNS0095608	Whole white alabastrum(tetraploid) 2	76.072
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.984
	CNS0095610	Silvery flower (diploied) 1	12.853
	CNS0095611	Silvery flower (diploied) 2	13.414
	CNS0095612	Silvery flower (diploied) 3	17.453
	CNS0095613	Golden flower (tetraploid) 1	22.090
	CNS0095614	Golden flower (tetraploid) 2	18.540
	CNS0095615	Golden flower (tetraploid) 3	8.871
CRA001975	CRR073297	Stem 1	104.567
	CRR073298	Stem 2	91.648
	CRR073299	Stem 3	52.005
	CRR073300	Leaf 1	125.757
	CRR073301	Leaf 2	155.722
	CRR073302	Leaf 3	136.103
	CRR073303	Juvenile bud 1	120.956
	CRR073304	Juvenile bud 2	80.548
	CRR073305	Juvenile bud 3	122.214
	CRR073306	Third green 1	11.811
	CRR073307	Third green 2	16.712
	CRR073308	Third green 3	15.529
	CRR073309	Second white 1	10.898
	CRR073310	Second white 2	4.589
	CRR073311	Second white 3	4.511
	CRR073312	Silver flowering 1	7.879
	CRR073313	Silver flowering 2	12.353
	CRR073314	Silver flowering 3	18.441
	CRR073315	Gold flowering 1	54.593
	CRR073316	Gold flowering 2	40.066
	CRR073317	Gold flowering 3	63.593
	CRR073318	Tawny withering 1	70.812
	CRR073319	Tawny withering 2	49.461
	CRR073320	Tawny withering 3	74.064