Detail information of GWHGAAZE031547


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08620.19.31506E-21unnamed protein product [Coffea canephora]
Swissprottr|Q7XTJ3|ODPA3_ORYSJ7E-20Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (Precursor)
trEMBLtr|A0A068UJA1|A0A068UJA1_COFCA3E-21Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}
TAIR10AT1G01090.10.00000004pyruvate dehydrogenase E1 alpha

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6078178460782075+
GWHAAZE00000009mRNA6078178460782075+
GWHAAZE00000009exon6078178460781947+
GWHAAZE00000009exon6078203060782075+
GWHAAZE00000009CDS6078178460781947+
GWHAAZE00000009CDS6078203060782075+
Transcript Sequence

Network for GWHGAAZE031547

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00161PDHA, pdhA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.233
SRR3591707mature leaf0.560
SRR3591708Shoot apex0.312
SRR3591709Stem1.246
SRR3591710White floral bud0.640
SRR3591711White flower0.000
SRR3591712Green floral bud0.108
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.235
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.094
SRR8316894Third green stage 0.161
SRR8316900Third green stage 0.165
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.268
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.413
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.445
SRP132670SRR6706286Control0.122
SRR6706287Light intensity 50%0.254
SRR6706288Light intensity 20%0.192
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.201
CNS0095593Slightly white alabastrum(diploid) 21.242
CNS0095594Slightly white alabastrum(diploid) 30.646
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.195
CNS0095601Golden flower (diploid) 10.068
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.193
CNS0095605Slightly white alabastrum(tetraploid) 20.238
CNS0095606Slightly white alabastrum(tetraploid) 32.196
CNS0095607Whole white alabastrum(tetraploid) 10.128
CNS0095608Whole white alabastrum(tetraploid) 20.372
CNS0095609Whole white alabastrum(tetraploid) 30.112
CNS0095610Silvery flower (diploied) 10.264
CNS0095611Silvery flower (diploied) 20.163
CNS0095612Silvery flower (diploied) 30.000
CNS0095613Golden flower (tetraploid) 10.139
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.488
CRR073298Stem 20.000
CRR073299Stem 30.569
CRR073300Leaf 10.000
CRR073301Leaf 20.360
CRR073302Leaf 30.001
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.348
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.125
CRR073310Second white 20.394
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 21.365
CRR073317Gold flowering 30.021
CRR073318Tawny withering 10.180
CRR073319Tawny withering 20.847
CRR073320Tawny withering 30.136