Gene detail

Detail information of GWHGAAZE031554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO86644.1	0	hypothetical protein CISIN_1g004262mg [Citrus sinensis]
Swissprot	tr\|Q6R0H1\|LHY_ARATH	1E-114	Protein LHY
trEMBL	tr\|A0A067H465\|A0A067H465_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO86644.1}
TAIR10	AT1G01060.4	7E-84	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60885566	60891989	+
GWHAAZE00000009	mRNA	60885566	60891989	+
GWHAAZE00000009	exon	60885566	60885631	+
GWHAAZE00000009	exon	60886174	60886239	+
GWHAAZE00000009	exon	60886529	60886640	+
GWHAAZE00000009	exon	60886898	60886959	+
GWHAAZE00000009	exon	60889699	60889926	+
GWHAAZE00000009	exon	60890232	60891434	+
GWHAAZE00000009	exon	60891549	60891989	+
GWHAAZE00000009	CDS	60885566	60885631	+
GWHAAZE00000009	CDS	60886174	60886239	+
GWHAAZE00000009	CDS	60886529	60886640	+
GWHAAZE00000009	CDS	60886898	60886959	+
GWHAAZE00000009	CDS	60889699	60889926	+
GWHAAZE00000009	CDS	60890232	60891434	+
GWHAAZE00000009	CDS	60891549	60891989	+

Transcript Sequence
>GWHTAAZE031590 ATGCATGTTTGGATGCGACGAGATCAGAGCTTCCAGATTTCTCTTATGCTATGGCTGTTTTGGAAGGGAGGATTTGAAGCAGCGATAGCAAACATGGAACAATACTATTCTGGTGAAGAACTCGTTATTAAGGCAAGGAAGCCCTATACAATCACCAAGCAACGTGAGCGATGGACAGAGGAGGAGCATAACAGATTTCTTGAAGCCTTGAAGCTTTATGGACGAGCTTGGCAGAGAATAGAAGAACATATTGGAACCAAGACTGCAGTGCAGATCAGAAGTCACGCCCAGAAATTCTTTACAAAGTTGGAGAAAGAGGCTGTTGTTAAAGGAGTTCCAACAGGACAATCTCTTGAAATAGAGATTCCTCCTCCACGGCCCAAAAGGAAACCAAGTAATCCCTATCCTCGAAAGAACTGTGTGGGGGCTCCTACTCTACAAGTGGCAGGGAAGGATGGGAAATCCATGGCATCAGTTTCTTCTGTGCAAGCTACCAGCCACACACTAGACTTGGAGAAAGAACCACCTCCTGAGGATGAAACAAATGAATCTTATCTCACTGTTGAGCCCAATCAAAGGCTGGACAAGCTTGACTCCAAAAATAGATTTTATGATAAGGGCACATTTAAGACTTCAAACCTAGGGAGCTCTAATCCTTCAAATGAGAAGTTGGTTCAAACCCAAGAACTAGATGAACAAACCCTGCCTCGTAATATTGGTGCTTCATCGACAAATGATATGCAAGCATCCCAGAATTACCCAAGGCATGTCCCTGTACACATTGTTGATGGAAACCAAGGAACAAGTAAACAGAATGTGTCCCAAGAAATGCTGTACCAATTGGGACAAGTCCATGGACAACCTCCCCTCTTTGCAAATCTACCTGCTGCATCTGTAACTACCGAAGATCACAGTATGTCGAGATCTTCCGTTCATCAGTCATTGCCTACCTTCCTTCCTCTTTTCAACTCAATGAGCAGCAATCAAGATGATTACCGGTCCTTTCTTCACATGTCCTCAACTTTTCCAAGTCTCATTGTTTCTGCCCTGCTACAGAACCCAGCAGCCCATGCTGCAGCAAGCATTGCAGCAGCTAGCGTATATCCCTGTGCAAATGCGGAAGCCTCTGCAGGAGATTTTCAGTCAAGGCTGACAAATTCAGCTCCCAGTATGACAGCCCTTGCTGCCGCTACTGTAGCAGCAGCAACTGCATGGTGGGCAGCCCATGGATTGCTTCCCTCGTGTAATCTCTTTGATGCAGCCTTCACCGGCAATATTGTATCAGCGGCAACTGCAGCACCAGGTGATGACAGCCAAGCAGCAGCCAGTGATAAAAGAGGAGAAGTTGCTCCTGATCCTGCCTTGGAGAATCAAGAACTGGACCCTGAAGGTTCAGAAGCAGCTTTGCCAGAACAAAATTCATCTGATTCAGAGGAAAGTGAAGATAGGAAGCTAAATACTGGGACAGCTGCTGCTGCTGAACCTGTGCAATCTGCAGCAGCGACTGAGCTTCATGATTCAAACAAGATGAGGAGCAGGAAACAGTTGGACCGTTCTTCTTGTGGCTCCAACACTGCTTCTAGCAGTGAAGTAGAGACGGACGCTTTAGGAAAGCATGAGAAAGGTAAGGAAGAGTGCAAAGAACCTGATGTGAGTAATACTAGTAGTGATTCTAATCGTCGTCCTAGGATCTCAAGCAACTACATAAATGATTCATGGAAGGAAGTTTCTCAAGGGGGGCGGTTGGCTTTTCAAGCACTCTTCTCAAGAGAGAGACTGCCACAGAGCTTTTCACCGCCAAATAATGAGGGACAACAGAAGAGTGAAATGGAGAAAGATGATAAACAATGTACTGGTGAAGATGATAGGTTGCAGTTAGATCTCAACAGTAAAATATGGGGGAATTGCTCCTTGGATTGTCTACCAACAGAGAATAATAGCCTGCTATTATTGAGAAGGGAAAATAATGGGGAGCAGGAGGGGATGCTGACAACGGGAGTTGGTGGACAAGTGAAGATGATGAAGGGTCCTACTCATCATAGAACGACAGGCTTCAAACCTTACAAAAGGTGTTCGGTAGAGGCCAACAAGGAAAGCAGGGTGGTTAGTACAGGCGGCAACCCGGATGAAGAGAAGAATTCCAAGAGAATGCGCTTGGAAGGAGGAGCTTCGGCTTGA

Network for GWHGAAZE031554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	55	98	2.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
K12133	LHY	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	155.480
	SRR3591706	second leaf	345.156
	SRR3591707	mature leaf	767.025
	SRR3591708	Shoot apex	181.512
	SRR3591709	Stem	260.970
	SRR3591710	White floral bud	124.678
	SRR3591711	White flower	234.292
	SRR3591712	Green floral bud	73.319
	SRR3591713	Yellow flower	181.996
SRP173429	SRR8316895	Juvenile bud stage	83.833
	SRR8316896	Juvenile bud stage	84.460
	SRR8316897	Juvenile bud stage	54.376
	SRR8316894	Third green stage	40.018
	SRR8316900	Third green stage	58.355
	SRR8316901	Third green stage	61.910
	SRR8316898	Complete white stage	43.192
	SRR8316899	Complete white stage	87.530
	SRR8316903	Complete white stage	93.002
	SRR8316902	Silver flowering stage	93.450
	SRR8316904	Silver flowering stage	125.318
	SRR8316905	Silver flowering stage	58.805
	SRR8316906	Gold flowering stage	239.747
	SRR8316907	Gold flowering stage	254.899
	SRR8316908	Gold flowering stage	247.961
SRP132670	SRR6706286	Control	179.643
	SRR6706287	Light intensity 50%	207.688
	SRR6706288	Light intensity 20%	194.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	80.395
	CNS0095593	Slightly white alabastrum(diploid) 2	60.561
	CNS0095594	Slightly white alabastrum(diploid) 3	79.532
	CNS0095595	Whole white alabastrum(diploid) 2	56.458
	CNS0095596	Whole white alabastrum(diploid) 3	45.055
	CNS0095597	Whole white alabastrum(diploid) 4	52.087
	CNS0095598	Silvery flower (diploied) 1	101.436
	CNS0095599	Silvery flower (diploied) 2	125.397
	CNS0095600	Silvery flower (diploied) 3	104.991
	CNS0095601	Golden flower (diploid) 1	117.826
	CNS0095602	Golden flower (diploid) 2	111.653
	CNS0095603	Golden flower (diploid) 3	109.205
	CNS0095604	Slightly white alabastrum(tetraploid) 1	78.189
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.067
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.748
	CNS0095607	Whole white alabastrum(tetraploid) 1	65.684
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.677
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.083
	CNS0095610	Silvery flower (diploied) 1	141.320
	CNS0095611	Silvery flower (diploied) 2	52.139
	CNS0095612	Silvery flower (diploied) 3	5.602
	CNS0095613	Golden flower (tetraploid) 1	71.563
	CNS0095614	Golden flower (tetraploid) 2	102.327
	CNS0095615	Golden flower (tetraploid) 3	199.021
CRA001975	CRR073297	Stem 1	8.030
	CRR073298	Stem 2	8.313
	CRR073299	Stem 3	4.105
	CRR073300	Leaf 1	17.008
	CRR073301	Leaf 2	16.672
	CRR073302	Leaf 3	8.117
	CRR073303	Juvenile bud 1	12.038
	CRR073304	Juvenile bud 2	11.170
	CRR073305	Juvenile bud 3	14.337
	CRR073306	Third green 1	283.022
	CRR073307	Third green 2	158.755
	CRR073308	Third green 3	228.842
	CRR073309	Second white 1	64.697
	CRR073310	Second white 2	131.815
	CRR073311	Second white 3	104.011
	CRR073312	Silver flowering 1	39.226
	CRR073313	Silver flowering 2	38.142
	CRR073314	Silver flowering 3	27.709
	CRR073315	Gold flowering 1	2.306
	CRR073316	Gold flowering 2	3.447
	CRR073317	Gold flowering 3	1.874
	CRR073318	Tawny withering 1	2.929
	CRR073319	Tawny withering 2	2.864
	CRR073320	Tawny withering 3	2.269