Detail information of GWHGAAZE031652


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263854.10PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Vitis vinifera]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|F6HB91|F6HB91_VITVI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT3G45140.10lipoxygenase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6268672362694832+
GWHAAZE00000009mRNA6268672362694832+
GWHAAZE00000009exon6268672362687071+
GWHAAZE00000009exon6268929062689558+
GWHAAZE00000009exon6268970762689881+
GWHAAZE00000009exon6269079662690993+
GWHAAZE00000009exon6269161762691702+
GWHAAZE00000009exon6269204562692155+
GWHAAZE00000009exon6269252762692828+
GWHAAZE00000009exon6269310462693370+
GWHAAZE00000009exon6269407362694832+
GWHAAZE00000009CDS6268672362687071+
GWHAAZE00000009CDS6268929062689558+
GWHAAZE00000009CDS6268970762689881+
GWHAAZE00000009CDS6269079662690993+
GWHAAZE00000009CDS6269161762691702+
GWHAAZE00000009CDS6269204562692155+
GWHAAZE00000009CDS6269252762692828+
GWHAAZE00000009CDS6269310462693370+
GWHAAZE00000009CDS6269407362694832+
Transcript Sequence

Network for GWHGAAZE031652

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0229GO:0009058 biosynthetic process GOslim:biological_process
GO:0016844 strictosidine synthase activity GOslim:molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function
map00592 alpha-Linolenic acid metabolism
map00591 Linoleic acid metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT1332032.80E-07
PF00305.20Lipoxygenase2162648.20E-17
PF00305.20Lipoxygenase2653314.30E-12
PF00305.20Lipoxygenase3318216.00E-256
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005515molecular_functionprotein binding
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf59.282
SRR3591706second leaf10.348
SRR3591707mature leaf4.242
SRR3591708Shoot apex9.994
SRR3591709Stem9.482
SRR3591710White floral bud302.126
SRR3591711White flower316.116
SRR3591712Green floral bud30.218
SRR3591713Yellow flower50.210
SRP173429 SRR8316895Juvenile bud stage 1.777
SRR8316896Juvenile bud stage 0.872
SRR8316897Juvenile bud stage 4.365
SRR8316894Third green stage 2.184
SRR8316900Third green stage 11.024
SRR8316901Third green stage 12.552
SRR8316898Complete white stage 33.183
SRR8316899Complete white stage 32.616
SRR8316903Complete white stage 71.242
SRR8316902Silver flowering stage5.502
SRR8316904Silver flowering stage9.304
SRR8316905Silver flowering stage0.895
SRR8316906Gold flowering stage 1.163
SRR8316907Gold flowering stage 25.300
SRR8316908Gold flowering stage 114.733
SRP132670SRR6706286Control29.289
SRR6706287Light intensity 50%33.676
SRR6706288Light intensity 20%29.049
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.070
CNS0095593Slightly white alabastrum(diploid) 213.891
CNS0095594Slightly white alabastrum(diploid) 36.525
CNS0095595Whole white alabastrum(diploid) 210.564
CNS0095596Whole white alabastrum(diploid) 33.757
CNS0095597Whole white alabastrum(diploid) 411.280
CNS0095598Silvery flower (diploied) 1574.530
CNS0095599Silvery flower (diploied) 2352.888
CNS0095600Silvery flower (diploied) 386.650
CNS0095601Golden flower (diploid) 1123.200
CNS0095602Golden flower (diploid) 284.222
CNS0095603Golden flower (diploid) 380.683
CNS0095604Slightly white alabastrum(tetraploid) 16.973
CNS0095605Slightly white alabastrum(tetraploid) 25.947
CNS0095606Slightly white alabastrum(tetraploid) 318.392
CNS0095607Whole white alabastrum(tetraploid) 119.672
CNS0095608Whole white alabastrum(tetraploid) 212.743
CNS0095609Whole white alabastrum(tetraploid) 32.903
CNS0095610Silvery flower (diploied) 159.011
CNS0095611Silvery flower (diploied) 2117.582
CNS0095612Silvery flower (diploied) 327.846
CNS0095613Golden flower (tetraploid) 110.534
CNS0095614Golden flower (tetraploid) 219.236
CNS0095615Golden flower (tetraploid) 312.364
CRA001975CRR073297Stem 10.704
CRR073298Stem 20.526
CRR073299Stem 30.351
CRR073300Leaf 17.563
CRR073301Leaf 26.159
CRR073302Leaf 32.548
CRR073303Juvenile bud 14.857
CRR073304Juvenile bud 26.984
CRR073305Juvenile bud 317.528
CRR073306Third green 11.260
CRR073307Third green 22.622
CRR073308Third green 32.729
CRR073309Second white 10.092
CRR073310Second white 20.283
CRR073311Second white 30.169
CRR073312Silver flowering 10.687
CRR073313Silver flowering 20.761
CRR073314Silver flowering 30.405
CRR073315Gold flowering 10.254
CRR073316Gold flowering 20.132
CRR073317Gold flowering 30.327
CRR073318Tawny withering 11.598
CRR073319Tawny withering 21.648
CRR073320Tawny withering 30.523