Gene detail

Detail information of GWHGAAZE031657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP39809.1	9.8266E-114	hypothetical protein JCGZ_04908 [Jatropha curcas]
COG	YP_001996504.1	1E-16	RNP-1 like RNA-binding protein
Swissprot	tr\|P82277\|RRP2_SPIOL	1E-97	30S ribosomal protein 2, chloroplastic (Precursor)
trEMBL	tr\|A0A067L6U8\|A0A067L6U8_JATCU	4E-114	Uncharacterized protein {ECO:0000313\|EMBL:KDP39809.1}
TAIR10	AT3G52150.2	7E-66	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	62798932	62802292	-
GWHAAZE00000009	mRNA	62798932	62802292	-
GWHAAZE00000009	exon	62801957	62802292	-
GWHAAZE00000009	exon	62801132	62801233	-
GWHAAZE00000009	exon	62800203	62800502	-
GWHAAZE00000009	exon	62798932	62799071	-
GWHAAZE00000009	CDS	62801957	62802292	-
GWHAAZE00000009	CDS	62801132	62801233	-
GWHAAZE00000009	CDS	62800203	62800502	-
GWHAAZE00000009	CDS	62799033	62799071	-
GWHAAZE00000009	three_prime_UTR	62798932	62799032	-

Transcript Sequence
>GWHTAAZE031695 ATGGCAACGATTTCCTCGATACTCTCCCCCACCCTCCTCCACTATCACAACTCCATAAAATCATTCACATCCCAACAACACTCACTTTTCTCAAAACTCTCTCAAATTCACTCTCACTCCTCACAAATTTCTCTCAAATCCACTCTCTATCCTATTATTTCGAACCCTAGAGGGCCCAAAAGAGCCTACGCCGTTGCTGAAGACACGGCGGTGCTGACAAACGACCCCTCCGCGGAGGCGGCGAGAAGGCTTTACGTTGGGAATATTCCCCGGACGGTTAACAATGAGGAGCTGAGAGGGATTTTTGAAGAACACGGTGCTGTTGAGAAGGTCGAGGTAATGTATGATAAGTATTCTGGAAGGAGCCGCCGATTTGCGTTTGTTACAATGAAGACAATTGAGGATGTGAATGCTGCTATTGAAAAGCTAAATGGAACACAAATTGGAGGACGTGAGATCAAAGTCAACGTAACAGAAAAACCATTATCAAATCCAGATTTTTCACTTCTCCAAGCAGAGGAATCCCAATTCATTGACAGCGCATATAAAGTATACGTAGGTAATCTTGCAAAGGCAGCTACCTCCGAGAAGCTCAAAAACTTTTTCTCCGAGAAGGGAAAGGTTCTTAGTGCAAAGATATCCCGAGTTCCTGGGACTTCGAAATCCAGGGGATTTGGATTTGTTTCCTTCTCGTCAGAAGAGGATGTAGAAGCTGCTGTCTCGTCTTTGAATAATGCATTGTTTGAAGGGCAGGAAATTCGGGTAAATAAAGCATAAGTTTGTTTGCAGAAATCCAGGGAAAGGGAGCAGTGCTGTACCAAAAATTGTGGATCTTCTTTCTAATAAGGAAAGGAGACCGAATATTGGCAAGTTAAATT

Network for GWHGAAZE031657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	84	154	1.40E-21
PF00076.23	RRM_1	184	254	3.80E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.230
	SRR3591706	second leaf	148.364
	SRR3591707	mature leaf	107.244
	SRR3591708	Shoot apex	126.018
	SRR3591709	Stem	18.100
	SRR3591710	White floral bud	31.146
	SRR3591711	White flower	47.830
	SRR3591712	Green floral bud	48.678
	SRR3591713	Yellow flower	55.990
SRP173429	SRR8316895	Juvenile bud stage	44.720
	SRR8316896	Juvenile bud stage	47.180
	SRR8316897	Juvenile bud stage	33.871
	SRR8316894	Third green stage	19.648
	SRR8316900	Third green stage	62.705
	SRR8316901	Third green stage	45.346
	SRR8316898	Complete white stage	10.307
	SRR8316899	Complete white stage	26.601
	SRR8316903	Complete white stage	16.863
	SRR8316902	Silver flowering stage	10.900
	SRR8316904	Silver flowering stage	16.266
	SRR8316905	Silver flowering stage	8.519
	SRR8316906	Gold flowering stage	19.656
	SRR8316907	Gold flowering stage	18.937
	SRR8316908	Gold flowering stage	28.327
SRP132670	SRR6706286	Control	51.468
	SRR6706287	Light intensity 50%	40.578
	SRR6706288	Light intensity 20%	43.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.140
	CNS0095593	Slightly white alabastrum(diploid) 2	17.397
	CNS0095594	Slightly white alabastrum(diploid) 3	17.327
	CNS0095595	Whole white alabastrum(diploid) 2	18.959
	CNS0095596	Whole white alabastrum(diploid) 3	19.065
	CNS0095597	Whole white alabastrum(diploid) 4	12.383
	CNS0095598	Silvery flower (diploied) 1	53.287
	CNS0095599	Silvery flower (diploied) 2	38.824
	CNS0095600	Silvery flower (diploied) 3	37.077
	CNS0095601	Golden flower (diploid) 1	32.948
	CNS0095602	Golden flower (diploid) 2	43.293
	CNS0095603	Golden flower (diploid) 3	38.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.253
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.461
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.836
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.690
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.104
	CNS0095610	Silvery flower (diploied) 1	47.536
	CNS0095611	Silvery flower (diploied) 2	60.397
	CNS0095612	Silvery flower (diploied) 3	40.959
	CNS0095613	Golden flower (tetraploid) 1	29.108
	CNS0095614	Golden flower (tetraploid) 2	41.462
	CNS0095615	Golden flower (tetraploid) 3	38.246
CRA001975	CRR073297	Stem 1	61.328
	CRR073298	Stem 2	49.084
	CRR073299	Stem 3	75.182
	CRR073300	Leaf 1	23.255
	CRR073301	Leaf 2	25.664
	CRR073302	Leaf 3	34.086
	CRR073303	Juvenile bud 1	27.701
	CRR073304	Juvenile bud 2	25.481
	CRR073305	Juvenile bud 3	27.098
	CRR073306	Third green 1	5.769
	CRR073307	Third green 2	5.848
	CRR073308	Third green 3	6.200
	CRR073309	Second white 1	21.711
	CRR073310	Second white 2	11.405
	CRR073311	Second white 3	6.797
	CRR073312	Silver flowering 1	9.701
	CRR073313	Silver flowering 2	13.021
	CRR073314	Silver flowering 3	10.139
	CRR073315	Gold flowering 1	151.248
	CRR073316	Gold flowering 2	173.622
	CRR073317	Gold flowering 3	182.236
	CRR073318	Tawny withering 1	21.953
	CRR073319	Tawny withering 2	18.963
	CRR073320	Tawny withering 3	27.784