Gene detail

Detail information of GWHGAAZE031773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002297758.1	2.0277E-154	GLUCOSE INSENSITIVE 1 family protein [Populus trichocarpa]
COG	YP_289531.1	2E-59	short-chain dehydrogenase/reductase (SDR) family protein
Swissprot	tr\|Q9C826\|ABA2_ARATH	6E-137	Xanthoxin dehydrogenase
trEMBL	tr\|B9GM33\|B9GM33_POPTR	8E-155	GLUCOSE INSENSITIVE 1 family protein {ECO:0000313\|EMBL:EEE82563.1}
TAIR10	AT1G52340.1	2E-109	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64691553	64692347	-
GWHAAZE00000009	mRNA	64691553	64692347	-
GWHAAZE00000009	exon	64691553	64692347	-
GWHAAZE00000009	CDS	64691553	64692347	-

Transcript Sequence
>GWHTAAZE031811 AGATTGTTAGGAAAAGTAGCATTGATCACCGGCGGTGCTATCGGCATTGGGGAGAGCATTGCCCGCTTGTTTCACAGGCACGGTGCAAAGGTTTGTGTGGTCGACATACAGGACAACATTGGCCAGCATCTTTGCCAAAACCTCGGCACTGGCGCATGTTTTTTCCATTGCGACGTCACACTAGAAGATGACGTAGCCCGAGCCGTCGATTTCACAGTCGAGAAATTTGGGACCCTCGATATCATGGTCAACAATGCCGGGATAGCAGGCCCGCCGTGCCCAGATATTCGGGACACGGACTTATCGATCTTTGAGAAGGTTTTTGATGTGAATGTGAAGGGCACATTCCTTGGAATGAAGCATGCGGCTCGTATAATGATCCCTCTCAAGAAGGGTTCGATCGTTTCTCTCTGTAGTGTCTCGGGCACACTAGGGGGGTTGGGCCCACACGCGTACACAGGGTCCAAGCACGCGGTCTTGGGGCTCACCAAGAACGTGGCAGCCGAGTTGGGGACACATGGTATACGGGTGAACTGTGTTTCACCATACGCGGTTCCCACGAGCATGCCCTTGGCTCACTTGCCTGAGAACGAGAGGACCGAAGACGCGATGGTTGGTCTGCGTGCTTTTGCTGCGAGAAATGCGAACTTGCAAGGGGTTGAGTTGTTGGTTGATGATGTAGCGAATGCCGTGGTTTTTTTGGCTAGTGATGAGGCGAGGTACATAAGCGGGGTTAATCTTATGCTAGATGGTGGTTTCACTTGTGTGAACCACTCGCTCAGGGTCTTTCGATGA

Network for GWHGAAZE031773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	13	254	1.50E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09841	ABA2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.933
	SRR3591706	second leaf	22.728
	SRR3591707	mature leaf	43.412
	SRR3591708	Shoot apex	17.800
	SRR3591709	Stem	19.079
	SRR3591710	White floral bud	66.092
	SRR3591711	White flower	70.388
	SRR3591712	Green floral bud	87.995
	SRR3591713	Yellow flower	48.715
SRP173429	SRR8316895	Juvenile bud stage	15.798
	SRR8316896	Juvenile bud stage	20.263
	SRR8316897	Juvenile bud stage	10.999
	SRR8316894	Third green stage	10.947
	SRR8316900	Third green stage	40.142
	SRR8316901	Third green stage	37.590
	SRR8316898	Complete white stage	17.324
	SRR8316899	Complete white stage	68.880
	SRR8316903	Complete white stage	24.448
	SRR8316902	Silver flowering stage	16.395
	SRR8316904	Silver flowering stage	20.500
	SRR8316905	Silver flowering stage	10.479
	SRR8316906	Gold flowering stage	32.240
	SRR8316907	Gold flowering stage	28.755
	SRR8316908	Gold flowering stage	23.997
SRP132670	SRR6706286	Control	70.177
	SRR6706287	Light intensity 50%	68.314
	SRR6706288	Light intensity 20%	67.455
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.070
	CNS0095593	Slightly white alabastrum(diploid) 2	37.963
	CNS0095594	Slightly white alabastrum(diploid) 3	23.163
	CNS0095595	Whole white alabastrum(diploid) 2	38.645
	CNS0095596	Whole white alabastrum(diploid) 3	39.363
	CNS0095597	Whole white alabastrum(diploid) 4	33.210
	CNS0095598	Silvery flower (diploied) 1	41.465
	CNS0095599	Silvery flower (diploied) 2	36.388
	CNS0095600	Silvery flower (diploied) 3	56.833
	CNS0095601	Golden flower (diploid) 1	33.858
	CNS0095602	Golden flower (diploid) 2	45.752
	CNS0095603	Golden flower (diploid) 3	43.096
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.086
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	89.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.072
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.922
	CNS0095610	Silvery flower (diploied) 1	72.440
	CNS0095611	Silvery flower (diploied) 2	88.986
	CNS0095612	Silvery flower (diploied) 3	119.113
	CNS0095613	Golden flower (tetraploid) 1	70.599
	CNS0095614	Golden flower (tetraploid) 2	79.192
	CNS0095615	Golden flower (tetraploid) 3	42.407
CRA001975	CRR073297	Stem 1	26.819
	CRR073298	Stem 2	29.066
	CRR073299	Stem 3	42.216
	CRR073300	Leaf 1	40.040
	CRR073301	Leaf 2	45.427
	CRR073302	Leaf 3	61.591
	CRR073303	Juvenile bud 1	55.012
	CRR073304	Juvenile bud 2	49.642
	CRR073305	Juvenile bud 3	54.482
	CRR073306	Third green 1	28.755
	CRR073307	Third green 2	28.044
	CRR073308	Third green 3	21.532
	CRR073309	Second white 1	49.460
	CRR073310	Second white 2	46.297
	CRR073311	Second white 3	31.267
	CRR073312	Silver flowering 1	39.785
	CRR073313	Silver flowering 2	50.232
	CRR073314	Silver flowering 3	40.644
	CRR073315	Gold flowering 1	69.775
	CRR073316	Gold flowering 2	70.282
	CRR073317	Gold flowering 3	89.221
	CRR073318	Tawny withering 1	46.410
	CRR073319	Tawny withering 2	38.972
	CRR073320	Tawny withering 3	37.812