Gene detail

Detail information of GWHGAAZE031896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275778.1	8.3722E-127	PREDICTED: cysteine synthase [Vitis vinifera]
COG	YP_007142175.1	1E-91	cysteine synthase
Swissprot	tr\|O23733\|CYSK1_BRAJU	1E-123	Cysteine synthase
trEMBL	tr\|A5BDL2\|A5BDL2_VITVI	1E-126	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT4G14880.4	2E-95	O-acetylserine (thiol) lyase (OAS-TL) isoform A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66799423	66803754	+
GWHAAZE00000009	mRNA	66799423	66803754	+
GWHAAZE00000009	exon	66799423	66799451	+
GWHAAZE00000009	exon	66799596	66799653	+
GWHAAZE00000009	exon	66800209	66800472	+
GWHAAZE00000009	exon	66800553	66800690	+
GWHAAZE00000009	exon	66801066	66801174	+
GWHAAZE00000009	exon	66801361	66801440	+
GWHAAZE00000009	exon	66802577	66802657	+
GWHAAZE00000009	exon	66803496	66803754	+
GWHAAZE00000009	CDS	66799423	66799451	+
GWHAAZE00000009	CDS	66799596	66799653	+
GWHAAZE00000009	CDS	66800209	66800472	+
GWHAAZE00000009	CDS	66800553	66800690	+
GWHAAZE00000009	CDS	66801066	66801174	+
GWHAAZE00000009	CDS	66801361	66801440	+
GWHAAZE00000009	CDS	66802577	66802657	+
GWHAAZE00000009	CDS	66803496	66803585	+
GWHAAZE00000009	three_prime_UTR	66803586	66803754	+

Transcript Sequence
>GWHTAAZE031934 ATGGAACCCTGTTCCAGTGTGAAAGACAGGATTGCGTATAGTATGATTCAAGATGCAGAAGAGAAGGGCCTGATTACCCCAGGGAAGACGGTACTCATTGAGGCTACTAGTGGTAATACCGGTATTGGTTTGGCATTTATCGCAGCAGTTAAAGGTTACAAGCTCATTGTAGTTATGCCGGTTACGTATAGCCTTGAGAGAAGGATTATTCTGAAAGCTTTCGGAGCAGAGTTGTACCTCACCGACATAGCCAAGGGCATTGATGGAGTTTTTCAAAAGGTGGATGAGTTACTGGGAAAGACACCAAATGGCTATTTTCTTCGGCAATTCGATAATCCTGCCAACCCAAAGATTCACTATGAAACTACTGGACCAGAGATCTGGAAGGGCTCTGAAGAGAAAGTTGATGCCTTGGTTTGCGGGATAGGGACTGGTGGTACGGTAACTGGTGCTGGGAAGTTCCTTAAGGAGCAAAATCCAAACATAAAGGTATATGGTGTAGAACCAGCTGAAAGTGCCATTCTGAATGGGGGAAGCCCAGGCGAGTTACAATATCTTGCTCAGCATACTTGCATCCCTTTTATTATGTTAATGTTTTGCTTGCATAAGATCCAAGGAATTGGTGCCGGTATCATCCCTAGTATCTTGGACGTCAGCCTTCTTGACGAAGTCGTTCCAGTAGGCATTTCATCTGGGGCTGCAGCTGCTGCAGCAATAAAGATTGCAAAGAGGCCTGAAAACACTGGGAAACTCATTGTTGTTATTTTCCCAAGCTTTGGAGAGCGGTACCTGTCCACTGTGCTGTTTGATTCCTTGCGTCAAGAAGCAGAAAGCATGACTTTTGAGTGAGTTGCTTCCGTGTTTCAAGAAGCTTGCTTTTATTATTTTGTACTCTTTGAGAATACGCTTCTTTATTTCCAGTGTTAGCTGAAATAACTTGATGGAAGTCAAATTAATAGGCTTTCCCTTGTGTTTTGTACTGCTTTTCATGTTACTCCATGTTTACTTCTCTATAGCA

Network for GWHGAAZE031896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	2	243	4.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.424
	SRR3591706	second leaf	0.213
	SRR3591707	mature leaf	0.114
	SRR3591708	Shoot apex	1.572
	SRR3591709	Stem	0.952
	SRR3591710	White floral bud	0.156
	SRR3591711	White flower	0.470
	SRR3591712	Green floral bud	0.186
	SRR3591713	Yellow flower	0.498
SRP173429	SRR8316895	Juvenile bud stage	1.166
	SRR8316896	Juvenile bud stage	1.724
	SRR8316897	Juvenile bud stage	0.135
	SRR8316894	Third green stage	0.495
	SRR8316900	Third green stage	1.302
	SRR8316901	Third green stage	1.389
	SRR8316898	Complete white stage	0.527
	SRR8316899	Complete white stage	3.051
	SRR8316903	Complete white stage	0.313
	SRR8316902	Silver flowering stage	0.174
	SRR8316904	Silver flowering stage	0.343
	SRR8316905	Silver flowering stage	0.082
	SRR8316906	Gold flowering stage	0.483
	SRR8316907	Gold flowering stage	0.137
	SRR8316908	Gold flowering stage	0.295
SRP132670	SRR6706286	Control	1.132
	SRR6706287	Light intensity 50%	0.996
	SRR6706288	Light intensity 20%	1.130
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.710
	CNS0095593	Slightly white alabastrum(diploid) 2	2.396
	CNS0095594	Slightly white alabastrum(diploid) 3	2.041
	CNS0095595	Whole white alabastrum(diploid) 2	1.417
	CNS0095596	Whole white alabastrum(diploid) 3	0.776
	CNS0095597	Whole white alabastrum(diploid) 4	1.077
	CNS0095598	Silvery flower (diploied) 1	0.310
	CNS0095599	Silvery flower (diploied) 2	0.593
	CNS0095600	Silvery flower (diploied) 3	0.203
	CNS0095601	Golden flower (diploid) 1	0.432
	CNS0095602	Golden flower (diploid) 2	0.324
	CNS0095603	Golden flower (diploid) 3	0.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.576
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.598
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.264
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.259
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.014
	CNS0095612	Silvery flower (diploied) 3	0.128
	CNS0095613	Golden flower (tetraploid) 1	0.002
	CNS0095614	Golden flower (tetraploid) 2	0.019
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	1.120
	CRR073298	Stem 2	0.522
	CRR073299	Stem 3	2.328
	CRR073300	Leaf 1	1.530
	CRR073301	Leaf 2	0.809
	CRR073302	Leaf 3	1.171
	CRR073303	Juvenile bud 1	1.037
	CRR073304	Juvenile bud 2	0.472
	CRR073305	Juvenile bud 3	1.014
	CRR073306	Third green 1	0.235
	CRR073307	Third green 2	0.085
	CRR073308	Third green 3	0.059
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.112
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.062
	CRR073316	Gold flowering 2	0.654
	CRR073317	Gold flowering 3	0.106
	CRR073318	Tawny withering 1	4.874
	CRR073319	Tawny withering 2	7.749
	CRR073320	Tawny withering 3	2.273