Gene detail

Detail information of GWHGAAZE031911

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275778.1	8.3677E-151	PREDICTED: cysteine synthase [Vitis vinifera]
COG	YP_591171.1	6E-109	cysteine synthase
Swissprot	tr\|Q43317\|CYSK_CITLA	4E-150	Cysteine synthase
trEMBL	tr\|F6HTU8\|F6HTU8_VITVI	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT4G14880.4	2E-116	O-acetylserine (thiol) lyase (OAS-TL) isoform A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67174087	67195745	+
GWHAAZE00000009	mRNA	67174087	67195745	+
GWHAAZE00000009	exon	67174087	67174125	+
GWHAAZE00000009	exon	67174215	67174285	+
GWHAAZE00000009	exon	67174466	67174523	+
GWHAAZE00000009	exon	67174944	67175207	+
GWHAAZE00000009	exon	67175528	67175590	+
GWHAAZE00000009	exon	67176060	67176111	+
GWHAAZE00000009	exon	67177616	67177695	+
GWHAAZE00000009	exon	67178694	67178753	+
GWHAAZE00000009	exon	67178870	67178950	+
GWHAAZE00000009	exon	67179289	67179374	+
GWHAAZE00000009	exon	67188435	67188483	+
GWHAAZE00000009	exon	67188573	67188682	+
GWHAAZE00000009	exon	67188823	67188880	+
GWHAAZE00000009	exon	67189300	67189563	+
GWHAAZE00000009	exon	67190336	67190473	+
GWHAAZE00000009	exon	67190831	67190882	+
GWHAAZE00000009	exon	67193420	67193499	+
GWHAAZE00000009	exon	67195229	67195309	+
GWHAAZE00000009	exon	67195491	67195745	+
GWHAAZE00000009	CDS	67174087	67174125	+
GWHAAZE00000009	CDS	67174215	67174285	+
GWHAAZE00000009	CDS	67174466	67174523	+
GWHAAZE00000009	CDS	67174944	67175207	+
GWHAAZE00000009	CDS	67175528	67175590	+
GWHAAZE00000009	CDS	67176060	67176111	+
GWHAAZE00000009	CDS	67177616	67177695	+
GWHAAZE00000009	CDS	67178694	67178753	+
GWHAAZE00000009	CDS	67178870	67178950	+
GWHAAZE00000009	CDS	67179289	67179374	+
GWHAAZE00000009	CDS	67188435	67188483	+
GWHAAZE00000009	CDS	67188573	67188682	+
GWHAAZE00000009	CDS	67188823	67188880	+
GWHAAZE00000009	CDS	67189300	67189563	+
GWHAAZE00000009	CDS	67190336	67190473	+
GWHAAZE00000009	CDS	67190831	67190882	+
GWHAAZE00000009	CDS	67193420	67193499	+
GWHAAZE00000009	CDS	67195229	67195309	+
GWHAAZE00000009	CDS	67195491	67195580	+
GWHAAZE00000009	three_prime_UTR	67195581	67195745	+

Transcript Sequence
>GWHTAAZE031949 ATGGAAGCTAAGTGCGAAATTGCAAACGATGTTACTGAACTAATTGGCAACACGCCAATGGTATATATCAATAAAATTGTGGATGGTTGTGTAGCTCGTATTGCTGCAAAGATTGGGTATAGTATGATTAAAGATGCAGAAGAGAAGGGCCTGATTACCCCTGGAAAGACGGTACTCATTGAGGCCACCAGTGGTAATACCGGCATAGGTTTGGCATTTATTGCAGCAGCTAAGGGTTACAAACTTATTGTAGTTATGCCGGCTTCATATAGCCTTGAAAGAAAGATTGTTCTGAGTGCTTTTGGAGCAGTAGTGTACCTCACTGATCCAGCCAAGGGAATTGATGGAATTCTTCAAAAGGTAGATGAGTTACTGGAAAAGACACCAAATGGCCACTTTCTTCGGCAATTCGACAATCCTGCCAACCCAAAGATTCACTATGAAATTACTGGACCAGAGATCTGGAAGGGCTCTGAAGGGAAAGTTGATGCGTTGGTATATGGTGTAGAACCAACAGAAAGTGCCATTCTGAATGGGGGAAGCCCTGGCCCGCACAAGATCCAAGGAATTGGTGCCGGTTTCATCCCTGGTACCTTGGACGTCAGTCTGCTTGACGAAGTTGTTCCAATATCTAGTGAAGAAGCTATTGACACTGCAAAACTTCTTGCATTGAAGGAAGGTTTGCTGGTAGGCCCTTCATCTGGGGCTGCAGCGGCTGCTGCGATAAAGATAGCAAAGAGGCCAGAAAATGCTGGGAAACTCATTGTTTTGGTTTTCCCAAGCTTTGGAGAGCGGTACCTGTCCACTGTGATGTTTGATTCCTTGCGGCAAGAAGCAGAAAGCATGACTTTCGATAATCTGCATATGGAAGCTAAGTGCAAAATTGCAAACGATGTTACTGAACTAATTGGAAACACGCCAATGGTATATATCAATAAAATTGTGGATGGCTGTGTAGCTCGTATTGCTGCAAAGTTAGAGACAATGGAGCCCTGTTCTAGTGTGAAAGACAGGATTGGGTATAGTATGATTAAAGATGCAGAAGAGAAGGGATTGATTACCCCTGGAAAGACGGTACTCATTGAGGCCACCGGTGGTAATACCGGCATAGGTTTGGCATTTATTGCAGCAGCTAAGGGTTACAAACTTATCGTAGTTATGCCGGCTTCATATAGCCTTGAAAGAAAGATTGTTCTGAGAGCTTTTGGAGCAGAAGTGTACCTCACTGATCCAGCCATGGGAATTGAAAGAGTTCTTCAAAAGGTGGATGAGTTACTGGAAAAGACACCAAATGGCCATTTTCTTCGGCAATTCGACAATCCTGCCAACCCAAAGATTCACTATGAAACTACTGGACCAGAGATCTGGAAGGGCTCTGATGGGAAAGTTGATGCCTTGGTTTGCGGGATAGGGACCGGGGGTACGGTAATTGGTGCTGGGAAGTTCCTTAAGGAGCAAAATCCAAACATAAAGGTATATGGTGTAGAACCAGCTGAAAGTGCCATTCTGAATGGGGGAAGCCCTGGCCCACATAAGATCCAAGGACTTGGTGCTGGTTTCATCCCTAGTATCTTGGACGTCAGTCTTCTTGACGAAGTTGTTCCAGTAGGCCCTTCATCTGGGGCTGCGGCGGCTGCTGCAATACAGATAGCAAAGAGGCCAGAAAACGCTGGAAAACTCATTGTTTCGGTTTTCCCAAGCTTTGGAGAGCGGTACCTGTCAACTGTGATGTTTGATTCCTTACGGCAAGAAGCAGAAAGCATGACTTTCGAGTGAGTTGCTTCCCTGTTCAAAGAAGTTTGCTTTTATTGTTATCTGCTCTTTGGTTATACTTTTTTTTATTTTTTTTAATTTTGCCGTGTTAGCTGAAATAACTTAACCGAACTCAAATAAGCTTCCCTTGTGTTTTGTATTGCTTCTCACATTAATGACCATCCTTGC

Network for GWHGAAZE031911

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	39	169	1.80E-22
PF00291.26	PALP	300	546	2.70E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.843
	SRR3591706	second leaf	12.649
	SRR3591707	mature leaf	23.477
	SRR3591708	Shoot apex	10.955
	SRR3591709	Stem	15.752
	SRR3591710	White floral bud	14.009
	SRR3591711	White flower	14.310
	SRR3591712	Green floral bud	9.987
	SRR3591713	Yellow flower	17.669
SRP173429	SRR8316895	Juvenile bud stage	7.703
	SRR8316896	Juvenile bud stage	9.230
	SRR8316897	Juvenile bud stage	3.924
	SRR8316894	Third green stage	3.800
	SRR8316900	Third green stage	11.739
	SRR8316901	Third green stage	10.846
	SRR8316898	Complete white stage	10.500
	SRR8316899	Complete white stage	19.768
	SRR8316903	Complete white stage	15.843
	SRR8316902	Silver flowering stage	9.918
	SRR8316904	Silver flowering stage	11.537
	SRR8316905	Silver flowering stage	7.798
	SRR8316906	Gold flowering stage	14.084
	SRR8316907	Gold flowering stage	14.288
	SRR8316908	Gold flowering stage	13.948
SRP132670	SRR6706286	Control	11.695
	SRR6706287	Light intensity 50%	9.860
	SRR6706288	Light intensity 20%	11.221
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.698
	CNS0095593	Slightly white alabastrum(diploid) 2	10.796
	CNS0095594	Slightly white alabastrum(diploid) 3	10.505
	CNS0095595	Whole white alabastrum(diploid) 2	9.929
	CNS0095596	Whole white alabastrum(diploid) 3	9.842
	CNS0095597	Whole white alabastrum(diploid) 4	8.148
	CNS0095598	Silvery flower (diploied) 1	20.935
	CNS0095599	Silvery flower (diploied) 2	16.891
	CNS0095600	Silvery flower (diploied) 3	17.333
	CNS0095601	Golden flower (diploid) 1	16.278
	CNS0095602	Golden flower (diploid) 2	12.635
	CNS0095603	Golden flower (diploid) 3	14.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.121
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.205
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.701
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.250
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.296
	CNS0095610	Silvery flower (diploied) 1	11.605
	CNS0095611	Silvery flower (diploied) 2	14.048
	CNS0095612	Silvery flower (diploied) 3	14.206
	CNS0095613	Golden flower (tetraploid) 1	7.024
	CNS0095614	Golden flower (tetraploid) 2	11.153
	CNS0095615	Golden flower (tetraploid) 3	10.503
CRA001975	CRR073297	Stem 1	13.973
	CRR073298	Stem 2	10.662
	CRR073299	Stem 3	11.352
	CRR073300	Leaf 1	10.458
	CRR073301	Leaf 2	13.147
	CRR073302	Leaf 3	8.527
	CRR073303	Juvenile bud 1	10.124
	CRR073304	Juvenile bud 2	6.845
	CRR073305	Juvenile bud 3	11.026
	CRR073306	Third green 1	13.278
	CRR073307	Third green 2	12.888
	CRR073308	Third green 3	12.037
	CRR073309	Second white 1	12.242
	CRR073310	Second white 2	9.841
	CRR073311	Second white 3	6.240
	CRR073312	Silver flowering 1	4.322
	CRR073313	Silver flowering 2	2.956
	CRR073314	Silver flowering 3	4.215
	CRR073315	Gold flowering 1	21.889
	CRR073316	Gold flowering 2	24.391
	CRR073317	Gold flowering 3	10.064
	CRR073318	Tawny withering 1	11.959
	CRR073319	Tawny withering 2	12.646
	CRR073320	Tawny withering 3	10.688