Gene detail

Detail information of GWHGAAZE032015

Functional Annotation

Database	Orthologs	Annotation
Nr	AID55339.1	1-deoxy-D-xylulose-5-phosphate synthase [Actinidia chinensis]
COG	YP_004985738.1	1-deoxy-D-xylulose 5-phosphate synthase
Swissprot	tr\|Q6YU51\|DXS2_ORYSJ	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A075EC87\|A0A075EC87_ACTCH	1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313\|EMBL:AID55339.1}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69000277	69006261	+
GWHAAZE00000009	mRNA	69000277	69006261	+
GWHAAZE00000009	exon	69000277	69000297	+
GWHAAZE00000009	exon	69001291	69001479	+
GWHAAZE00000009	exon	69001984	69002148	+
GWHAAZE00000009	exon	69002474	69002896	+
GWHAAZE00000009	exon	69003511	69003783	+
GWHAAZE00000009	exon	69003859	69004182	+
GWHAAZE00000009	exon	69004415	69004696	+
GWHAAZE00000009	exon	69005168	69005452	+
GWHAAZE00000009	exon	69005798	69005912	+
GWHAAZE00000009	exon	69006242	69006261	+
GWHAAZE00000009	CDS	69000277	69000297	+
GWHAAZE00000009	CDS	69001291	69001479	+
GWHAAZE00000009	CDS	69001984	69002148	+
GWHAAZE00000009	CDS	69002474	69002896	+
GWHAAZE00000009	CDS	69003511	69003783	+
GWHAAZE00000009	CDS	69003859	69004182	+
GWHAAZE00000009	CDS	69004415	69004696	+
GWHAAZE00000009	CDS	69005168	69005452	+
GWHAAZE00000009	CDS	69005798	69005912	+
GWHAAZE00000009	CDS	69006242	69006261	+

Transcript Sequence
>GWHTAAZE032053 ATGCTAAAATCGTTGTTTAAGATTAATGGAGTTATAACTGCAAAGTACAACGATGGAAGCAATGATAATGACATCATGGTAAAGGGAGAACAAACCAAAAGACTAAACGAGCAGTTCAAAAAATCGCTCAATTACTCGGGAGAAAAGCCTCTCACTCCAATTTTGGACACTATCAACTATCCAATTCACATGAACAATCTTTCCATTCAGGAGCTTGAAAAGTTGGCTGATGAACTCCGGGAAGAGATTGTACACACAGTTTCTAAAATTGGTGGCCACTTAAGCTCAAGCCTAGGCGTGGCTGAGCTCACTGTCGCACTTCATCATGTGTTCAACACTCCTGATGATAAGATCATCTGGGATGTGGGCCATCAGGCATACCCTCATAAGATTTTAACTGGAAGGAGGTCGAAAATGAACACCATACGACAAACATGTGGCCTAGCAGGCTTCCCAAAAAGGGACGAGAGCATGCACGACGCATTTGGCGCAGGTCATAGTTCAACTAGCATTTCAGCCGGGTTAGGGATGGCGGTTGGAAGAGACTTATTGGGGAAGGACAATCACGTGATCGCTGTAATTGGTGATGGGGCAATGACAGCCGGTCAAGCATACGAGGCGATGAATAATGCTGGGTATCTTGATTCAAATCTTATAATCATTTTGAACGATAATAGACAAGTTTCTCTGCCGACTGCCACCGTTGATGGCCCTGCGCAACCTGTTGGAGCTTTGAGCAAAGCTCTTACAAGGTTACAATCAAGTCGAAAGCTTCGCCAGCTTCGTGAAGTAGCAAAAGGAGTGACAAAGCAATTGGGGGACCAGACCCACAAGATTGCGGCCAAGGTGGACGCATACATGAAAGGGATGACTGGTGGCCAAGGGGTTTCGTTGTTTGAGGAGCTGGGGCTGTATTATATTGGTCCAGTTGATGGTCACAATGTTGAAGATCTTGTTTATATTTTGAACAAAGTGAAGGCTATGCCAGCTTCAGGCCCTGTTCTTATTCACATTATTACTGAAAAGGAAAAGGCTATCCTCCTGCTGAAGTTGCTGCTGATAAAATGCATGAGACTTGTTTCTACAGGTGTAGTGAAATTTGATCCCCAAACGGGAAAGCAGTCAAAGACAAAATCAAGAACACTTTCATACACCCAATATTTTGCCGAGTCTTTAATCGCTGAAGCAGAGAGAGACGATAAAATCGTAGCGATTCACGCTGCTATGGGAGGTGGAACTGGCCTCAATGCATTCCAAAAACGTTTTCCTCACCGATGTTTTGATGTTGGGATTGCCGAACAACACGCGGTCACCTTTGCAGCTGGTTTAGCAACTGAAGGCCTCAAGCCCTTTTGTGCCATTTACTCGTCCTTTCTACAACGTGGTTATGATCAGGTTGTTCATGATGTGGATCTTCAAAAGCTTCCGGTAAGATTTGCAATGGATAGGGCTGGCCTTGTGGGTGCGGACGGTCCAACACATTGTGGGGCATTTGACACGACTTTCATGGCTTGTTTACCAAACATGGTAGTAATGGCTCCTTCGTGCGAGAGAGAGCTAATCAACATGGTTGCCACAGCGGCAGCTATAGATGATCGGCCGAGTTGCTTTAGGTACCCTAGAGGAAATGGCATCGGTTCCATTCTTCAACCAGACTACAAAGGAATCCCTCTTGAGGTTGGAAGAGGAAGAGTGATAAGAGAAGGAAGTAGAGTGGCCATACTAGGCTATGGTACCATGGTGCAAAATTGCTTAGAAGCTGCAGAGTTGCTCCAAGTTCTCGGAGTATCGACCACAGTGGCCGATGCACGATTTTGCAAGCCTCTTGATGGAAATTTGGTGAGGCAACTGGCTCAAGAACATGAAGTTCTTATCACTGTTGAAGAAGGATCAATTGGAGGATTTGGCTCTCATGTTTCTCATTTCATGGGCTTGAATGGATTACTTGATGGAAATCTTAAGTGGAGAGCAATGATGCTACCTGACAGATATATTGAGCATGGGGCACAAACAAACCAAATTGAAGAGGCTGGGCTTAGTTCAAAGCAAATTGCAGCCACTGTTTTGTCACTAATTGCTGTTACACGAGATATCTAA

Network for GWHGAAZE032015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	55	340	3.80E-108
PF02779.25	Transket_pyr	381	543	4.70E-39
PF02780.21	Transketolase_C	561	684	6.20E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.781
	SRR3591706	second leaf	36.056
	SRR3591707	mature leaf	13.961
	SRR3591708	Shoot apex	15.048
	SRR3591709	Stem	0.835
	SRR3591710	White floral bud	44.523
	SRR3591711	White flower	69.280
	SRR3591712	Green floral bud	19.850
	SRR3591713	Yellow flower	47.194
SRP173429	SRR8316895	Juvenile bud stage	12.342
	SRR8316896	Juvenile bud stage	7.212
	SRR8316897	Juvenile bud stage	4.601
	SRR8316894	Third green stage	1.540
	SRR8316900	Third green stage	3.965
	SRR8316901	Third green stage	6.917
	SRR8316898	Complete white stage	5.376
	SRR8316899	Complete white stage	41.661
	SRR8316903	Complete white stage	6.983
	SRR8316902	Silver flowering stage	210.601
	SRR8316904	Silver flowering stage	342.703
	SRR8316905	Silver flowering stage	186.282
	SRR8316906	Gold flowering stage	830.501
	SRR8316907	Gold flowering stage	765.058
	SRR8316908	Gold flowering stage	737.275
SRP132670	SRR6706286	Control	5.805
	SRR6706287	Light intensity 50%	5.926
	SRR6706288	Light intensity 20%	7.419
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.981
	CNS0095593	Slightly white alabastrum(diploid) 2	5.742
	CNS0095594	Slightly white alabastrum(diploid) 3	10.069
	CNS0095595	Whole white alabastrum(diploid) 2	11.504
	CNS0095596	Whole white alabastrum(diploid) 3	1.362
	CNS0095597	Whole white alabastrum(diploid) 4	18.672
	CNS0095598	Silvery flower (diploied) 1	9.565
	CNS0095599	Silvery flower (diploied) 2	7.062
	CNS0095600	Silvery flower (diploied) 3	29.693
	CNS0095601	Golden flower (diploid) 1	6.260
	CNS0095602	Golden flower (diploid) 2	29.555
	CNS0095603	Golden flower (diploid) 3	27.583
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.282
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.263
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.002
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.052
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.597
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.343
	CNS0095610	Silvery flower (diploied) 1	22.403
	CNS0095611	Silvery flower (diploied) 2	40.142
	CNS0095612	Silvery flower (diploied) 3	1235.991
	CNS0095613	Golden flower (tetraploid) 1	128.271
	CNS0095614	Golden flower (tetraploid) 2	35.192
	CNS0095615	Golden flower (tetraploid) 3	239.881
CRA001975	CRR073297	Stem 1	6.600
	CRR073298	Stem 2	11.914
	CRR073299	Stem 3	10.882
	CRR073300	Leaf 1	5.188
	CRR073301	Leaf 2	3.687
	CRR073302	Leaf 3	6.649
	CRR073303	Juvenile bud 1	9.209
	CRR073304	Juvenile bud 2	10.430
	CRR073305	Juvenile bud 3	3.706
	CRR073306	Third green 1	1353.548
	CRR073307	Third green 2	687.959
	CRR073308	Third green 3	887.253
	CRR073309	Second white 1	1247.067
	CRR073310	Second white 2	1689.759
	CRR073311	Second white 3	1701.581
	CRR073312	Silver flowering 1	1127.605
	CRR073313	Silver flowering 2	951.857
	CRR073314	Silver flowering 3	878.736
	CRR073315	Gold flowering 1	1.455
	CRR073316	Gold flowering 2	3.709
	CRR073317	Gold flowering 3	3.210
	CRR073318	Tawny withering 1	5.186
	CRR073319	Tawny withering 2	14.224
	CRR073320	Tawny withering 3	4.289