Detail information of GWHGAAZE032115


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265494.10PREDICTED: homeobox protein knotted-1-like 13 isoform X3 [Vitis vinifera]
Swissprottr|O22300|LET12_SOLLC5E-179Homeobox protein knotted-1-like LET12
trEMBLtr|F6HCJ0|F6HCJ0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49936.1}
TAIR10AT5G25220.21E-136KNOTTED1-like homeobox gene 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7077497870782643-
GWHAAZE00000009mRNA7077497870782643-
GWHAAZE00000009exon7078199670782643-
GWHAAZE00000009exon7078020070780320-
GWHAAZE00000009exon7077689170777084-
GWHAAZE00000009exon7077667270776803-
GWHAAZE00000009exon7077497870775118-
GWHAAZE00000009CDS7078199670782643-
GWHAAZE00000009CDS7078020070780320-
GWHAAZE00000009CDS7077689170777084-
GWHAAZE00000009CDS7077667270776803-
GWHAAZE00000009CDS7077497870775118-
Transcript Sequence

Network for GWHGAAZE032115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0175GO:0000159 protein phosphatase type 2A complex GOslim:cellular_component
GO:0005634 nucleus GOslim:cellular_component
Transcription factor HB-KNOX family Transcription factor HB-KNOX
Ubiquitin_F-box family Ubiquitin_F-box family
Transcription factor SET family Transcription factor SET


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03790.14KNOX11501912.90E-17
PF03791.14KNOX22062561.70E-18
PF03789.14ELK3143358.80E-07
PF05920.12Homeobox_KN3543932.00E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-KNOX

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.393
SRR3591706second leaf136.355
SRR3591707mature leaf179.131
SRR3591708Shoot apex114.418
SRR3591709Stem25.013
SRR3591710White floral bud59.207
SRR3591711White flower57.739
SRR3591712Green floral bud61.774
SRR3591713Yellow flower12.842
SRP173429 SRR8316895Juvenile bud stage 20.149
SRR8316896Juvenile bud stage 25.006
SRR8316897Juvenile bud stage 7.500
SRR8316894Third green stage 10.857
SRR8316900Third green stage 15.209
SRR8316901Third green stage 20.070
SRR8316898Complete white stage 7.840
SRR8316899Complete white stage 71.124
SRR8316903Complete white stage 17.614
SRR8316902Silver flowering stage9.830
SRR8316904Silver flowering stage14.067
SRR8316905Silver flowering stage6.045
SRR8316906Gold flowering stage 16.042
SRR8316907Gold flowering stage 11.892
SRR8316908Gold flowering stage 15.633
SRP132670SRR6706286Control38.485
SRR6706287Light intensity 50%36.164
SRR6706288Light intensity 20%34.853
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.718
CNS0095593Slightly white alabastrum(diploid) 220.265
CNS0095594Slightly white alabastrum(diploid) 319.410
CNS0095595Whole white alabastrum(diploid) 226.132
CNS0095596Whole white alabastrum(diploid) 38.187
CNS0095597Whole white alabastrum(diploid) 420.267
CNS0095598Silvery flower (diploied) 1133.870
CNS0095599Silvery flower (diploied) 2105.259
CNS0095600Silvery flower (diploied) 337.958
CNS0095601Golden flower (diploid) 1126.294
CNS0095602Golden flower (diploid) 271.078
CNS0095603Golden flower (diploid) 370.187
CNS0095604Slightly white alabastrum(tetraploid) 119.210
CNS0095605Slightly white alabastrum(tetraploid) 213.954
CNS0095606Slightly white alabastrum(tetraploid) 334.857
CNS0095607Whole white alabastrum(tetraploid) 127.335
CNS0095608Whole white alabastrum(tetraploid) 213.482
CNS0095609Whole white alabastrum(tetraploid) 326.318
CNS0095610Silvery flower (diploied) 143.210
CNS0095611Silvery flower (diploied) 251.305
CNS0095612Silvery flower (diploied) 316.435
CNS0095613Golden flower (tetraploid) 15.564
CNS0095614Golden flower (tetraploid) 263.559
CNS0095615Golden flower (tetraploid) 39.864
CRA001975CRR073297Stem 122.636
CRR073298Stem 221.745
CRR073299Stem 321.904
CRR073300Leaf 122.749
CRR073301Leaf 223.915
CRR073302Leaf 316.244
CRR073303Juvenile bud 122.592
CRR073304Juvenile bud 216.882
CRR073305Juvenile bud 310.869
CRR073306Third green 19.369
CRR073307Third green 24.849
CRR073308Third green 312.860
CRR073309Second white 12.701
CRR073310Second white 24.743
CRR073311Second white 32.511
CRR073312Silver flowering 10.846
CRR073313Silver flowering 20.795
CRR073314Silver flowering 32.968
CRR073315Gold flowering 157.350
CRR073316Gold flowering 297.266
CRR073317Gold flowering 341.406
CRR073318Tawny withering 153.926
CRR073319Tawny withering 245.733
CRR073320Tawny withering 335.251