Detail information of GWHGAAZE032124


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264530.20PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Vitis vinifera]
COGYP_004775215.18E-49RHS repeat-associated core domain-containing protein
Swissprottr|Q9FII5|TDR_ARATH0Leucine-rich repeat receptor-like protein kinase TDR (Precursor)
trEMBLtr|F6HCK1|F6HCK1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49946.1}
TAIR10AT5G51350.10Leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7108556171089150+
GWHAAZE00000009mRNA7108556171089150+
GWHAAZE00000009exon7108556171085591+
GWHAAZE00000009exon7108627671088552+
GWHAAZE00000009exon7108879571089150+
GWHAAZE00000009CDS7108556171085591+
GWHAAZE00000009CDS7108627671088552+
GWHAAZE00000009CDS7108879571089099+
GWHAAZE00000009three_prime_UTR7108910071089150+
Transcript Sequence

Network for GWHGAAZE032124

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0084map04978 Mineral absorption
map04216 Ferroptosis
Protein Kinases RLK-Pelle_LRR-XI-1 family Protein Kinases RLK-Pelle_LRR-XI-1
map04142 Lysosome
GO:0030001 metal ion transport GOslim:biological_process
GO:0003968 RNA-directed 5'-3' RNA polymerase activity GOslim:molecular_function
GO:0046873 metal ion transmembrane transporter activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_82092632.30E-08
PF13855.7LRR_84254841.80E-08
PF07714.18PK_Tyr_Ser-Thr6318597.90E-17
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-XI-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.097
SRR3591706second leaf6.777
SRR3591707mature leaf3.848
SRR3591708Shoot apex9.126
SRR3591709Stem18.769
SRR3591710White floral bud16.128
SRR3591711White flower7.287
SRR3591712Green floral bud16.933
SRR3591713Yellow flower1.482
SRP173429 SRR8316895Juvenile bud stage 2.126
SRR8316896Juvenile bud stage 3.362
SRR8316897Juvenile bud stage 2.038
SRR8316894Third green stage 2.109
SRR8316900Third green stage 7.788
SRR8316901Third green stage 5.271
SRR8316898Complete white stage 1.909
SRR8316899Complete white stage 13.262
SRR8316903Complete white stage 3.471
SRR8316902Silver flowering stage0.284
SRR8316904Silver flowering stage1.039
SRR8316905Silver flowering stage0.164
SRR8316906Gold flowering stage 0.219
SRR8316907Gold flowering stage 0.261
SRR8316908Gold flowering stage 0.495
SRP132670SRR6706286Control3.174
SRR6706287Light intensity 50%4.131
SRR6706288Light intensity 20%4.350
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.995
CNS0095593Slightly white alabastrum(diploid) 23.186
CNS0095594Slightly white alabastrum(diploid) 32.176
CNS0095595Whole white alabastrum(diploid) 23.470
CNS0095596Whole white alabastrum(diploid) 32.189
CNS0095597Whole white alabastrum(diploid) 41.831
CNS0095598Silvery flower (diploied) 14.414
CNS0095599Silvery flower (diploied) 22.435
CNS0095600Silvery flower (diploied) 32.245
CNS0095601Golden flower (diploid) 13.925
CNS0095602Golden flower (diploid) 23.315
CNS0095603Golden flower (diploid) 33.101
CNS0095604Slightly white alabastrum(tetraploid) 19.446
CNS0095605Slightly white alabastrum(tetraploid) 26.470
CNS0095606Slightly white alabastrum(tetraploid) 325.290
CNS0095607Whole white alabastrum(tetraploid) 17.829
CNS0095608Whole white alabastrum(tetraploid) 26.281
CNS0095609Whole white alabastrum(tetraploid) 311.232
CNS0095610Silvery flower (diploied) 13.499
CNS0095611Silvery flower (diploied) 24.767
CNS0095612Silvery flower (diploied) 32.119
CNS0095613Golden flower (tetraploid) 11.169
CNS0095614Golden flower (tetraploid) 22.658
CNS0095615Golden flower (tetraploid) 30.916
CRA001975CRR073297Stem 12.119
CRR073298Stem 22.381
CRR073299Stem 32.335
CRR073300Leaf 14.148
CRR073301Leaf 23.074
CRR073302Leaf 32.179
CRR073303Juvenile bud 12.874
CRR073304Juvenile bud 22.127
CRR073305Juvenile bud 35.317
CRR073306Third green 10.000
CRR073307Third green 20.313
CRR073308Third green 30.435
CRR073309Second white 10.000
CRR073310Second white 20.284
CRR073311Second white 30.020
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.118
CRR073314Silver flowering 30.028
CRR073315Gold flowering 11.699
CRR073316Gold flowering 22.534
CRR073317Gold flowering 32.271
CRR073318Tawny withering 16.505
CRR073319Tawny withering 24.866
CRR073320Tawny withering 37.590