Gene detail

Detail information of GWHGAAZE032142

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007011977.1	0	Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q1PF50\|EDA2_ARATH	8E-26	Probable serine protease EDA2 (Precursor)
trEMBL	tr\|A0A061GJ80\|A0A061GJ80_THECC	0	Alpha/beta-Hydrolases superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY29596.1}
TAIR10	AT2G24280.1	0	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	71295821	71303707	-
GWHAAZE00000009	mRNA	71295821	71303707	-
GWHAAZE00000009	exon	71295821	71295945	-
GWHAAZE00000009	exon	71296023	71296072	-
GWHAAZE00000009	exon	71296161	71296240	-
GWHAAZE00000009	exon	71296363	71296515	-
GWHAAZE00000009	exon	71297240	71297395	-
GWHAAZE00000009	exon	71297491	71297614	-
GWHAAZE00000009	exon	71301718	71301830	-
GWHAAZE00000009	exon	71301924	71302057	-
GWHAAZE00000009	exon	71302696	71302876	-
GWHAAZE00000009	exon	71303357	71303707	-
GWHAAZE00000009	CDS	71303357	71303707	-
GWHAAZE00000009	CDS	71302696	71302876	-
GWHAAZE00000009	CDS	71301924	71302057	-
GWHAAZE00000009	CDS	71301718	71301830	-
GWHAAZE00000009	CDS	71297491	71297614	-
GWHAAZE00000009	CDS	71297240	71297395	-
GWHAAZE00000009	CDS	71296363	71296515	-
GWHAAZE00000009	CDS	71296161	71296240	-
GWHAAZE00000009	CDS	71296023	71296072	-
GWHAAZE00000009	CDS	71295821	71295945	-

Transcript Sequence
>GWHTAAZE032180 ATGGCTTCATCCCTTTTGATTCTCTCAACACTTCTCTTCTTCATCGTATTATCTTTGGCAACAACAATAGACTCATTGCCAGCATATTTCCCAAAACAAGCCAAGATTGTAAAACCAAAAACACCATACAAAGCCCATTACTTTCCTCAGCTTTTGGACCACTTCAATTTCTTGCCCAAGAGCTCTAAAATATTCTACCAAAAGTACCTCATAAACAACAAGTACTGGCACCATGGTGCCCCAATCTTTGTTTACACAGGCAATGAAGGCAATATCGAATGGTTTGCAGCTAATACTGGCTTCTTGCTTGACATTGCCCCCAAATTTCATGCTCTCCTTGTCTTCATTGAACATAGGTTTTATGGAGAATCATTGCCATTTGGGGAGGACTCTAACAAATCAGCAAAGACATTAGGGTATTTGAGTTCACAGCAAGCATTGGCAGATTTTGCTGTTTTGATAACAAGTTTGAAGCATAATCTATCTTCTGAGGCATCCCCTGTTGTGGTGTTTGGAGGTTCTTATGGAGGAATGCTGGCAGCATGGTTTAGACTGAAATACCCGCACATAGCAATTGGAGCATTGGCATCTTCAGCGCCAATATTGCAGTTTGATGACTTAACTCCATGGTCTAGCTTCTATGATGCTGTTTCCCAAGATTACAAGACTGTAAGCTTGAATTGCTATAAAGTTATAAAGGGGAGCTGGGCAGAATTAGATTCCTTGTCAACTCAAAAAGAAGGGCTTGTTGAACTCAGCAGGAGCTTCAAAACTTGCAAGAACCTCGAATCAATATATTCTGCTCGGAACTGGCTATGGACAGCTTTTGTTTACACAGCTATGGTGAATTACCCGGCCAAAGCCAATTTTATGATGCCCCTACCCGCCTATCCCGTTCAAGAGATGTGCAAGATTATTGATGGGTTCTTGCCGGGAGCTACAAAGCTTAGCAGGGTGTTTGCTGCAGCAAGCTTATACTACAATTATTCACAGACAGAAAAGTGTTTCAATGTTGAAGATAGAACTGATACTCATGGCCTCCATGGCTGGGACTGGCAGGCATGTACAGAGATGGTCATGCCAATGATATGTTCAAATGAGAGCATGTTCCCTCCGTCTTCATTTAGTTATAAGGATTTTGCACAGGATTGCATCGAGAAATATGGAGTTATGCCTAGACCGCATTGGATAACTACTGAATATGGTGGACACAGAATTGAACAAGTGCTCAAGAGATCAGGTAGCAATATCATATTTTCTAATGGTATGCAAGACCCATGGAGCAGAGGCAGCGTGCTCAAGAACATATCAGCTACCATAGTGGCACTTGTGACTGAAAAAGGAGCTCACCATGTGGATTTTAGATCTGCAACAAAAGATGACCCTGACTGGCTTGTTAGGCAAAGGCATCAAGAAGTGGAGATAATTCACAAGTGGTTAGATGAATATTATATGGACATCAAATAA

Network for GWHGAAZE032142

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05577.13	Peptidase_S28	50	470	7.30E-93

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01285	PRCP	Renin-angiotensin system	map04614
K01285	PRCP	Protein digestion and absorption	map04974

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.083
	SRR3591706	second leaf	5.560
	SRR3591707	mature leaf	0.389
	SRR3591708	Shoot apex	15.913
	SRR3591709	Stem	1.334
	SRR3591710	White floral bud	0.199
	SRR3591711	White flower	0.252
	SRR3591712	Green floral bud	0.188
	SRR3591713	Yellow flower	0.131
SRP173429	SRR8316895	Juvenile bud stage	1.079
	SRR8316896	Juvenile bud stage	0.489
	SRR8316897	Juvenile bud stage	0.272
	SRR8316894	Third green stage	0.249
	SRR8316900	Third green stage	0.109
	SRR8316901	Third green stage	0.129
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.112
	SRR8316903	Complete white stage	0.035
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.177
	SRR6706287	Light intensity 50%	0.239
	SRR6706288	Light intensity 20%	0.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.576
	CNS0095593	Slightly white alabastrum(diploid) 2	0.598
	CNS0095594	Slightly white alabastrum(diploid) 3	0.583
	CNS0095595	Whole white alabastrum(diploid) 2	0.275
	CNS0095596	Whole white alabastrum(diploid) 3	0.108
	CNS0095597	Whole white alabastrum(diploid) 4	0.375
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.141
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.084
	CNS0095602	Golden flower (diploid) 2	0.031
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.353
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.684
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.228
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.101
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.227
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	1.376
	CRR073298	Stem 2	1.069
	CRR073299	Stem 3	1.576
	CRR073300	Leaf 1	0.176
	CRR073301	Leaf 2	0.233
	CRR073302	Leaf 3	0.093
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.042
	CRR073305	Juvenile bud 3	0.079
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.095
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.053
	CRR073316	Gold flowering 2	0.239
	CRR073317	Gold flowering 3	0.195
	CRR073318	Tawny withering 1	0.309
	CRR073319	Tawny withering 2	0.714
	CRR073320	Tawny withering 3	0.959