Gene detail

Detail information of GWHGAAZE032338

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009594635.1	9.1766E-29	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Nicotiana tomentosiformis]
Swissprot	tr\|F4J9Q6\|FKB43_ARATH	2E-17	Peptidyl-prolyl cis-trans isomerase FKBP43
trEMBL	tr\|V4LA88\|V4LA88_EUTSA	3E-16	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU004231}
TAIR10	AT3G12340.1	1E-16	FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000018	gene	59136	66157	+
GWHAAZE00000018	mRNA	59136	66157	+
GWHAAZE00000018	exon	59136	59174	+
GWHAAZE00000018	exon	60603	60862	+
GWHAAZE00000018	exon	61549	61655	+
GWHAAZE00000018	exon	62125	62237	+
GWHAAZE00000018	exon	62688	62785	+
GWHAAZE00000018	exon	63115	63243	+
GWHAAZE00000018	exon	63379	63558	+
GWHAAZE00000018	exon	63936	64067	+
GWHAAZE00000018	exon	64908	64945	+
GWHAAZE00000018	exon	65043	65262	+
GWHAAZE00000018	exon	65385	65519	+
GWHAAZE00000018	exon	65742	65813	+
GWHAAZE00000018	exon	66043	66157	+
GWHAAZE00000018	CDS	59136	59174	+
GWHAAZE00000018	CDS	60603	60862	+
GWHAAZE00000018	CDS	61549	61655	+
GWHAAZE00000018	CDS	62125	62237	+
GWHAAZE00000018	CDS	62688	62785	+
GWHAAZE00000018	CDS	63115	63243	+
GWHAAZE00000018	CDS	63379	63558	+
GWHAAZE00000018	CDS	63936	64067	+
GWHAAZE00000018	CDS	64908	64945	+
GWHAAZE00000018	CDS	65043	65262	+
GWHAAZE00000018	CDS	65385	65519	+
GWHAAZE00000018	CDS	65742	65813	+
GWHAAZE00000018	CDS	66043	66157	+

Transcript Sequence
>GWHTAAZE032376 ATGAACCCTACATTCTACAAAGGGATGGTGATGATCATGGCCACACTTGCAGACCGGAGTGGGCTTTGGACTTCTAGGAGCGTGGTTCGATGTGCCGTGGGGAGTAAACCTCCTGTTTTTATATGCTCATTGTCAATAGGGGAGGTTGCTTCTTGTAAGTTGGATCTTGAGTTTGAGGAGAAAGATGATGTTGTTTTCTCTGTTAAGGGTCCCCGAGGAATTCATCTTGCCGGTTATTTTCTCAACTCCACCGGTGCCAATAGTACTAGCACTATTCTCACCACCGATGCCCCTAAACTCGGTTTGGAAGGAAAAGACGACATAGCAAAGCCGAGTTGTGAGGGACCCAATAACTTTAACTCTCAAGACGGGAATACTACCTACATTGACGAGCTTGAAGATGAAGCCGAAAAAATGAATACATTCAATAATGGAGCTAATCTCCCATGGGGGAACATTTTCCAAGCTGCTAAGAAGGATCACCGATCTGTTCTCACCACATATAGAGACCTTAAAGAGAATGTTGATCGAGTGGTGAATGATGCTAATGAGGAGCATTTAAATGAGAAAACCAATAAAAGTTGTGAAGAGGTGGACAAAATTCACGCTACTGACAGGAGTGTAGTCCACAAATGCGATTCTGAGGTGGTTAAAGAAGTTGACCCCGTGTTAGGTGATGGTGGAAAGCTGAACAACAGTAGTAGTTCGGAGAAGCTATTATTACAAGAGAATGGAAATGTTTTGAGCCCAAGTTGGAAAGGTGATGAAGGCAACAATGGGCTTAGACATTGTGGGAAAATGAAGAAAAAGAAGAGAAAAGAAACAGTCACGGAGTGCAAACTTGTGGAGGATGATGCTACAAATGCTGCTCATCAAGCAACTAGGGAGAAAAACTTTGAAACTGTCACAACAGATTCGTGTCCGAGCCAAGATAAAAGTTTGTCAATCTCGCCTAGGAAAAAACTAAAGGAAGTAGAGGTGGGAGATGGCAGTCCTGAAAAAGCAGATTTTGATCTGCCAGATGATGCTTTGGAATCACATATGAAACTACATAATGGAAGTCACAGCCAGTCAAAGAGAGTGAAGAAGAAAAAAAATAAAGTTACGGAAGATGATGATACACATCTTGACAAGTACGTTATCAGGGAAAAAGAACCTTTTCAACAGGAACAGGACCAGTACATTGTTCTGGAAGGAGAAAAGGAAATTGCGGAAGAAATGGCTACAAGCGGAAGTTGTAAAAGTGAAGAAAAATCACCTAAGAGAGCGAAAGTCAGCAAAAGAAGAAGTGGTCAACATGATGGAAATCCAAAGGGAGGCGACCTTGGCTCATTAGATTACATGGAGGATAGAGCTGGAGGTGGTGAAAAGGACAGAAAAGAGAAGAATGAATCGCTTGCCAACGACATAAACCAAAGGCAAAACAAGATCGTAGATGATAAGAAAATTGAGGTGGTTGTGGGCGGTTCATCAGCCTCCGAAAGGAAAAAGCTAAAATCACCCCCGAAATTGCAACATGATCAGGGTGACCTCGGCGGGGTTTATGCAACGGAGTTTGTGGACAATGGAGCTATAAAAGGTGTCGATGATAAAGAGCAGGGTCAGAATGATAAGCTAGCTGATGTTACTGATGAGTAA

Network for GWHGAAZE032338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0163

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17800.2	NPL	38	80	3.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.110
	SRR3591706	second leaf	0.085
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.050
	SRR3591709	Stem	0.064
	SRR3591710	White floral bud	1.084
	SRR3591711	White flower	0.087
	SRR3591712	Green floral bud	1.740
	SRR3591713	Yellow flower	0.068
SRP173429	SRR8316895	Juvenile bud stage	6.205
	SRR8316896	Juvenile bud stage	9.365
	SRR8316897	Juvenile bud stage	2.678
	SRR8316894	Third green stage	3.205
	SRR8316900	Third green stage	4.707
	SRR8316901	Third green stage	5.429
	SRR8316898	Complete white stage	0.542
	SRR8316899	Complete white stage	3.753
	SRR8316903	Complete white stage	1.410
	SRR8316902	Silver flowering stage	0.655
	SRR8316904	Silver flowering stage	1.206
	SRR8316905	Silver flowering stage	0.398
	SRR8316906	Gold flowering stage	1.276
	SRR8316907	Gold flowering stage	1.440
	SRR8316908	Gold flowering stage	1.460
SRP132670	SRR6706286	Control	6.051
	SRR6706287	Light intensity 50%	6.828
	SRR6706288	Light intensity 20%	6.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.932
	CNS0095593	Slightly white alabastrum(diploid) 2	8.827
	CNS0095594	Slightly white alabastrum(diploid) 3	11.797
	CNS0095595	Whole white alabastrum(diploid) 2	9.010
	CNS0095596	Whole white alabastrum(diploid) 3	7.520
	CNS0095597	Whole white alabastrum(diploid) 4	6.171
	CNS0095598	Silvery flower (diploied) 1	4.996
	CNS0095599	Silvery flower (diploied) 2	4.896
	CNS0095600	Silvery flower (diploied) 3	2.337
	CNS0095601	Golden flower (diploid) 1	4.499
	CNS0095602	Golden flower (diploid) 2	2.920
	CNS0095603	Golden flower (diploid) 3	3.005
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.476
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.681
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.753
	CNS0095610	Silvery flower (diploied) 1	1.091
	CNS0095611	Silvery flower (diploied) 2	0.669
	CNS0095612	Silvery flower (diploied) 3	0.865
	CNS0095613	Golden flower (tetraploid) 1	0.466
	CNS0095614	Golden flower (tetraploid) 2	0.574
	CNS0095615	Golden flower (tetraploid) 3	0.292
CRA001975	CRR073297	Stem 1	8.116
	CRR073298	Stem 2	8.641
	CRR073299	Stem 3	5.460
	CRR073300	Leaf 1	6.884
	CRR073301	Leaf 2	5.687
	CRR073302	Leaf 3	4.208
	CRR073303	Juvenile bud 1	3.883
	CRR073304	Juvenile bud 2	1.663
	CRR073305	Juvenile bud 3	2.526
	CRR073306	Third green 1	0.269
	CRR073307	Third green 2	0.313
	CRR073308	Third green 3	0.882
	CRR073309	Second white 1	0.925
	CRR073310	Second white 2	0.946
	CRR073311	Second white 3	0.597
	CRR073312	Silver flowering 1	0.217
	CRR073313	Silver flowering 2	0.290
	CRR073314	Silver flowering 3	0.626
	CRR073315	Gold flowering 1	2.122
	CRR073316	Gold flowering 2	2.694
	CRR073317	Gold flowering 3	0.557
	CRR073318	Tawny withering 1	7.711
	CRR073319	Tawny withering 2	8.755
	CRR073320	Tawny withering 3	8.118