Gene detail

Detail information of GWHGAAZE032456

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075145.1	0	PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum [Sesamum indicum]
COG	YP_007159033.1	4E-79	Delta-15 acyl-phospholipid desaturase
Swissprot	tr\|P48631\|FD6E2_SOYBN	0	Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2
trEMBL	tr\|M4QSE6\|M4QSE6_9ERIC	0	Fatty acid desaturase {ECO:0000313\|EMBL:AGH32914.1}
TAIR10	AT3G12120.2	9E-170	fatty acid desaturase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	2627093	2628244	-
GWHAAZE00000021	mRNA	2627093	2628244	-
GWHAAZE00000021	exon	2627093	2628244	-
GWHAAZE00000021	CDS	2627093	2628244	-

Transcript Sequence
>GWHTAAZE032494 ATGGGTGCTGGTGGTCGAATGTCTGTTCCCCCCAAGGGCAAGAAATATGAATCCGACGTACTCCAACGAGTCCCATACTCAAAGCCCCCATTCACCGTAGGTGAACTCAAGAAAGCTATTCCACCCCATTGCTTCAAGCGCTCCGTCCTCCGCTCTTTCTCCTACGTCGTCTATGACCTTGCCATAGCCTCCTTCCTCTACTACATCGCCACCAATTACATCCACCTCCTACCCCAAACCCTCCCTTACCTAGCCTGGCCCATTTACGGTGTCATCCAAGGTTGCATCCTAACTGGTGTGTGGGTCGTCGCACACGAGTGCGGCCACCATGCCTTTAGTGACCACCAATGGCTTGACGACACCGTCGGTCTTATCCTCCACTCATTCCTCCTAGTTCCATACTTCTCGTGGAAGTATAGCCACCGTCGCCACCACTCAAACACCGGTTCGCTTGAGCGAGACGAGGTCTTTGTCCCAAAGGTCAAATCAGACATTGGGGCCTCGACCAAGTACCTTAACAACCCACCCGGTCGAGTCCTCACTCTACTTGTCACTCTAACCCTAGGTTGGCCCTTGTACCTCCTATTCAATGTCTCAGGCCGCCACTATGAGCGATTCGCGTGCCACTTTGATCCCCAAAGCCCTATCTACTCTGACCGTGAGCGCACCCAAATCTTTCTCTCTGATGTTGGCGTCTTGGCCGTCACTTTCGCGCTAGTCAAGCTTGCTTTAGCTAAAGGGGTAGTTTGGGTGCTATGCGTCTACGGTGGTCCATTACTGATTGTGAACGCGTTTCTAGTACTCATCACTTTCCTTCAACACACGCACCCTTCGCTGCCTCACTATGATTCGTCTGAGTGGGATTGGTTGAGGGGAGCATTGGCAACGGTCGACAGAGACTACGGGATCTTGAACAAGGTGTTCCATAACATAACTGACACTCATGTAGCTCACCATTTGTTCTCCACAATGCCCCATTACCATGCAATGGAGGCCACAAAGGCGATTAAGCCGATTTTGGGGGAGTATTATCAATTTGATGGGACTCCATTTTTGAAGGCAATGTGGAGGGAGGCAAAGGAGTGTATTTATGTTGAGGCTGATGATGGTGAGCAGAATAAAGGTGTTTTCTGGTACAATAATAAGTTTTGA

Network for GWHGAAZE032456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11960.9	DUF3474	25	63	3.80E-07
PF00487.25	FA_desaturase	85	345	1.30E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10256	FAD2	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016717	molecular_function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	323.065
	SRR3591706	second leaf	274.345
	SRR3591707	mature leaf	28.935
	SRR3591708	Shoot apex	430.832
	SRR3591709	Stem	178.027
	SRR3591710	White floral bud	787.446
	SRR3591711	White flower	553.572
	SRR3591712	Green floral bud	670.273
	SRR3591713	Yellow flower	745.993
SRP173429	SRR8316895	Juvenile bud stage	208.636
	SRR8316896	Juvenile bud stage	296.610
	SRR8316897	Juvenile bud stage	175.171
	SRR8316894	Third green stage	117.065
	SRR8316900	Third green stage	459.883
	SRR8316901	Third green stage	468.082
	SRR8316898	Complete white stage	272.565
	SRR8316899	Complete white stage	406.209
	SRR8316903	Complete white stage	442.731
	SRR8316902	Silver flowering stage	293.672
	SRR8316904	Silver flowering stage	318.470
	SRR8316905	Silver flowering stage	159.818
	SRR8316906	Gold flowering stage	479.171
	SRR8316907	Gold flowering stage	484.054
	SRR8316908	Gold flowering stage	539.842
SRP132670	SRR6706286	Control	723.271
	SRR6706287	Light intensity 50%	666.034
	SRR6706288	Light intensity 20%	651.068
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	351.372
	CNS0095593	Slightly white alabastrum(diploid) 2	359.883
	CNS0095594	Slightly white alabastrum(diploid) 3	359.767
	CNS0095595	Whole white alabastrum(diploid) 2	435.567
	CNS0095596	Whole white alabastrum(diploid) 3	508.132
	CNS0095597	Whole white alabastrum(diploid) 4	482.793
	CNS0095598	Silvery flower (diploied) 1	246.329
	CNS0095599	Silvery flower (diploied) 2	282.927
	CNS0095600	Silvery flower (diploied) 3	736.803
	CNS0095601	Golden flower (diploid) 1	332.182
	CNS0095602	Golden flower (diploid) 2	719.703
	CNS0095603	Golden flower (diploid) 3	699.198
	CNS0095604	Slightly white alabastrum(tetraploid) 1	495.427
	CNS0095605	Slightly white alabastrum(tetraploid) 2	506.872
	CNS0095606	Slightly white alabastrum(tetraploid) 3	554.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	532.714
	CNS0095608	Whole white alabastrum(tetraploid) 2	550.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	670.479
	CNS0095610	Silvery flower (diploied) 1	631.558
	CNS0095611	Silvery flower (diploied) 2	922.300
	CNS0095612	Silvery flower (diploied) 3	1035.780
	CNS0095613	Golden flower (tetraploid) 1	711.038
	CNS0095614	Golden flower (tetraploid) 2	934.114
	CNS0095615	Golden flower (tetraploid) 3	1491.138
CRA001975	CRR073297	Stem 1	619.414
	CRR073298	Stem 2	575.565
	CRR073299	Stem 3	825.311
	CRR073300	Leaf 1	796.035
	CRR073301	Leaf 2	813.413
	CRR073302	Leaf 3	983.984
	CRR073303	Juvenile bud 1	812.607
	CRR073304	Juvenile bud 2	1076.262
	CRR073305	Juvenile bud 3	897.147
	CRR073306	Third green 1	1114.453
	CRR073307	Third green 2	924.791
	CRR073308	Third green 3	937.044
	CRR073309	Second white 1	1284.651
	CRR073310	Second white 2	702.800
	CRR073311	Second white 3	678.569
	CRR073312	Silver flowering 1	1200.656
	CRR073313	Silver flowering 2	1834.009
	CRR073314	Silver flowering 3	1429.585
	CRR073315	Gold flowering 1	91.703
	CRR073316	Gold flowering 2	66.992
	CRR073317	Gold flowering 3	110.736
	CRR073318	Tawny withering 1	259.527
	CRR073319	Tawny withering 2	219.214
	CRR073320	Tawny withering 3	202.971