Gene detail

Detail information of GWHGAAZE032496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006448017.1	0	hypothetical protein CICLE_v10015615mg [Citrus clementina]
COG	YP_007081240.1	0.00000005	WD40 repeat-containing protein
Swissprot	tr\|Q9SJW6\|ARC1B_ARATH	0	Actin-related protein 2/3 complex subunit 1B
trEMBL	tr\|A0A067EU28\|A0A067EU28_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO58603.1}
TAIR10	AT2G31300.1	2E-145	actin-related protein C1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3420475	3428890	+
GWHAAZE00000021	mRNA	3420475	3428890	+
GWHAAZE00000021	exon	3420475	3420544	+
GWHAAZE00000021	exon	3421398	3421483	+
GWHAAZE00000021	exon	3423929	3424005	+
GWHAAZE00000021	exon	3424169	3424263	+
GWHAAZE00000021	exon	3425070	3425139	+
GWHAAZE00000021	exon	3426417	3426486	+
GWHAAZE00000021	exon	3427115	3427188	+
GWHAAZE00000021	exon	3427278	3427320	+
GWHAAZE00000021	exon	3428353	3428434	+
GWHAAZE00000021	exon	3428572	3428660	+
GWHAAZE00000021	exon	3428783	3428890	+
GWHAAZE00000021	CDS	3420475	3420544	+
GWHAAZE00000021	CDS	3421398	3421483	+
GWHAAZE00000021	CDS	3423929	3424005	+
GWHAAZE00000021	CDS	3424169	3424263	+
GWHAAZE00000021	CDS	3425070	3425139	+
GWHAAZE00000021	CDS	3426417	3426486	+
GWHAAZE00000021	CDS	3427115	3427188	+
GWHAAZE00000021	CDS	3427278	3427320	+
GWHAAZE00000021	CDS	3428353	3428434	+
GWHAAZE00000021	CDS	3428572	3428660	+
GWHAAZE00000021	CDS	3428783	3428890	+

Transcript Sequence
>GWHTAAZE032534 ATGGCAGCAATTGCAATTCATCAGTTTGCTCAGTGCATTACTTGCCATGCTTGGAGTCCTGACCATTCCATGATTGCACTTTGTCCAAACAATAATGAAGTCCACATTTATAAACGATTGGAAGAGAAGTGGGAGAGGTTGCATGTCCTTCAAAAGCATGACCAAATTGTTTCTGGGATAGATTGGAGTACAAAATCGAACCGAATAGTAACTGTATCTCACGATCGGAACTCATACGTATGGAACCAAGAAGGAGCAGAATGGGTACCAACTCTCGTTATCCTTAGGCTAAATCGTGCTGCACTGTGTGTTCAGTGGAGTCCTTTAGGGAACAAGTTTGCTGTTGGAAGTGGGGCTAAGACTGTGTGTATATGCTACTATGAGCAAGAGAATAACTGGTGGGTCAGTAAGCTTATTAGGAAAAGGCATGATTCTTCAGTGACAAGTGTTGCTTGGCATCCTAATAACATTCTCCTGGCTACAACATCTACTGATGGAAAATGTAGAGTATTCTCCACTTTCATTAAAGGCGTTGATCCGAGGAATTCAGGGAAAGGGTCCATGTCAGAGACGAAGTTCGGAGAGCAAATTGTTCAGCTTGATCTCTCATTTTGCTGGGCATTTGGTGTCAAATGGTCCCCAAGTGGCAACACCTTAGCCTATGTAGGTCATAATTCATTTATCTACTTCGTTGATGAAGTTGGTCCTTCTCCTTCAGCACAAAGTGTAGCATTCCGTGATTTGCCTCTTCGCGATGTTCTATTTGTTTCTGAGAAAATGGTCATTGGTGTGGGATATGATTGCAATCCGATGGTTTTTGTTGCAGATGAAAGTGGAGTATGGTATGTTACAGTTCTGATTTGA

Network for GWHGAAZE032496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.8	ANAPC4_WD40	17	107	0.00018
PF00400.33	WD40	142	171	2.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05757	ARPC1A_B	Endocytosis	map04144
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.756
	SRR3591706	second leaf	12.446
	SRR3591707	mature leaf	6.527
	SRR3591708	Shoot apex	23.680
	SRR3591709	Stem	30.048
	SRR3591710	White floral bud	21.414
	SRR3591711	White flower	15.897
	SRR3591712	Green floral bud	24.348
	SRR3591713	Yellow flower	14.634
SRP173429	SRR8316895	Juvenile bud stage	16.213
	SRR8316896	Juvenile bud stage	26.121
	SRR8316897	Juvenile bud stage	11.206
	SRR8316894	Third green stage	11.870
	SRR8316900	Third green stage	31.480
	SRR8316901	Third green stage	32.271
	SRR8316898	Complete white stage	8.590
	SRR8316899	Complete white stage	30.194
	SRR8316903	Complete white stage	13.862
	SRR8316902	Silver flowering stage	5.670
	SRR8316904	Silver flowering stage	11.252
	SRR8316905	Silver flowering stage	5.715
	SRR8316906	Gold flowering stage	18.237
	SRR8316907	Gold flowering stage	15.563
	SRR8316908	Gold flowering stage	14.988
SRP132670	SRR6706286	Control	13.949
	SRR6706287	Light intensity 50%	17.743
	SRR6706288	Light intensity 20%	19.498
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.551
	CNS0095593	Slightly white alabastrum(diploid) 2	20.872
	CNS0095594	Slightly white alabastrum(diploid) 3	19.422
	CNS0095595	Whole white alabastrum(diploid) 2	20.690
	CNS0095596	Whole white alabastrum(diploid) 3	19.812
	CNS0095597	Whole white alabastrum(diploid) 4	20.673
	CNS0095598	Silvery flower (diploied) 1	12.909
	CNS0095599	Silvery flower (diploied) 2	13.484
	CNS0095600	Silvery flower (diploied) 3	12.152
	CNS0095601	Golden flower (diploid) 1	10.676
	CNS0095602	Golden flower (diploid) 2	10.873
	CNS0095603	Golden flower (diploid) 3	11.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.382
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.722
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.367
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.956
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.549
	CNS0095610	Silvery flower (diploied) 1	11.571
	CNS0095611	Silvery flower (diploied) 2	11.210
	CNS0095612	Silvery flower (diploied) 3	13.972
	CNS0095613	Golden flower (tetraploid) 1	5.894
	CNS0095614	Golden flower (tetraploid) 2	8.954
	CNS0095615	Golden flower (tetraploid) 3	5.329
CRA001975	CRR073297	Stem 1	22.404
	CRR073298	Stem 2	22.103
	CRR073299	Stem 3	18.026
	CRR073300	Leaf 1	28.274
	CRR073301	Leaf 2	22.293
	CRR073302	Leaf 3	23.590
	CRR073303	Juvenile bud 1	20.460
	CRR073304	Juvenile bud 2	15.628
	CRR073305	Juvenile bud 3	12.330
	CRR073306	Third green 1	4.977
	CRR073307	Third green 2	6.089
	CRR073308	Third green 3	6.152
	CRR073309	Second white 1	4.635
	CRR073310	Second white 2	11.032
	CRR073311	Second white 3	6.435
	CRR073312	Silver flowering 1	4.962
	CRR073313	Silver flowering 2	4.180
	CRR073314	Silver flowering 3	4.006
	CRR073315	Gold flowering 1	4.554
	CRR073316	Gold flowering 2	5.458
	CRR073317	Gold flowering 3	5.745
	CRR073318	Tawny withering 1	13.123
	CRR073319	Tawny withering 2	18.282
	CRR073320	Tawny withering 3	13.342