Gene detail

Detail information of GWHGAAZE032504

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075213.1	1.4003E-121	PREDICTED: dehydration-responsive element-binding protein 2F [Sesamum indicum]
Swissprot	tr\|Q9SVX5\|DRE2F_ARATH	5E-85	Dehydration-responsive element-binding protein 2F
trEMBL	tr\|B9II55\|B9II55_POPTR	1E-121	Dehydration responsive element binding protein 2F {ECO:0000313\|EMBL:EEF05070.1}
TAIR10	AT3G57600.1	6E-60	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3611540	3612397	-
GWHAAZE00000021	mRNA	3611540	3612397	-
GWHAAZE00000021	exon	3611540	3612397	-
GWHAAZE00000021	CDS	3611540	3612397	-

Transcript Sequence
>GWHTAAZE032542 ATGGATAGAAAACTCCAACTAAAGCCTTGGAAGAAGGGGCCAACCCGAGGCAAAGGAGGACCCCAAAACGCCTCATGCGAGTACCGAGGCGTCCGCCAAAGGACATGGGGCAAATGGGTGGCCGAGATCCGCGAGCCCAAGAAAAGAAGTCGGCTCTGGCTCGGCTCCTTCGCCACAGCCGAAGAAGCTGCCATGGCATACGACGAGGCTGCACGGAGACTCTACGGGCCCGATGCCTACCTCAACCTACCCCACCTCCGGTCAAATTTCAACCCGCTATACAAATCCCAGAAGTTCAAATGGTTCCCTTCCAAGGGATTTGCTTCGATGTTCCCCAATTGCAGTTTACTTAATTTGAACGCTCAACCGAGCGTTCATGTCATTCACCAAAGACTCGAGGAGATTAAGAATGCGCAAGCGATTTGTCTGTCGTCTTCATCGAGTTCAACGTCGGGTGACCCTAAAAGTGGGGTGCCAGTCACATGGGGTGGACCCAGCATTGTACATTGCGAAGGTGAAGAGAGGGAGGCAGAATTTTCGTCAAGAAATGTATTGGGGGTTTGTGAAGAAAAGCCTCAGATTGATTTGAATGAGTTTCTTCAACAATTGGGGGTAATGAAGAAAGATGATGATCCTATTATAGATACAAGTGAGGTCTCCAGTGGTCTTACGGAGATAGAATCTTCACTAAAAGACGATGATAATGGCCTTGCAGTGTTTGCAGAGAAGAGTTTTGATTGGGACACACTCAGTGAAATCCATGGAATAGAAAATCATCAAGTAGAAGAGAGCAACAGCTTTCATGTTTATGATATACATGAGGAGCTGGGGTTCCCTGCTTCGATTTGGAATTTCTAA

Network for GWHGAAZE032504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	26	76	2.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.523
	SRR3591706	second leaf	2.741
	SRR3591707	mature leaf	0.090
	SRR3591708	Shoot apex	2.902
	SRR3591709	Stem	1.467
	SRR3591710	White floral bud	1.489
	SRR3591711	White flower	2.196
	SRR3591712	Green floral bud	0.702
	SRR3591713	Yellow flower	1.562
SRP173429	SRR8316895	Juvenile bud stage	0.951
	SRR8316896	Juvenile bud stage	0.519
	SRR8316897	Juvenile bud stage	0.375
	SRR8316894	Third green stage	0.231
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.522
	SRR8316898	Complete white stage	0.131
	SRR8316899	Complete white stage	1.046
	SRR8316903	Complete white stage	0.222
	SRR8316902	Silver flowering stage	0.406
	SRR8316904	Silver flowering stage	0.080
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.121
	SRR8316907	Gold flowering stage	0.336
	SRR8316908	Gold flowering stage	0.414
SRP132670	SRR6706286	Control	0.163
	SRR6706287	Light intensity 50%	0.288
	SRR6706288	Light intensity 20%	0.309
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.602
	CNS0095593	Slightly white alabastrum(diploid) 2	0.896
	CNS0095594	Slightly white alabastrum(diploid) 3	2.066
	CNS0095595	Whole white alabastrum(diploid) 2	0.673
	CNS0095596	Whole white alabastrum(diploid) 3	0.070
	CNS0095597	Whole white alabastrum(diploid) 4	0.101
	CNS0095598	Silvery flower (diploied) 1	0.277
	CNS0095599	Silvery flower (diploied) 2	0.330
	CNS0095600	Silvery flower (diploied) 3	0.377
	CNS0095601	Golden flower (diploid) 1	0.054
	CNS0095602	Golden flower (diploid) 2	0.589
	CNS0095603	Golden flower (diploid) 3	0.463
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.410
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.835
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.066
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.307
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.052
	CNS0095610	Silvery flower (diploied) 1	1.509
	CNS0095611	Silvery flower (diploied) 2	0.365
	CNS0095612	Silvery flower (diploied) 3	0.419
	CNS0095613	Golden flower (tetraploid) 1	0.659
	CNS0095614	Golden flower (tetraploid) 2	0.526
	CNS0095615	Golden flower (tetraploid) 3	0.652
CRA001975	CRR073297	Stem 1	1.028
	CRR073298	Stem 2	0.773
	CRR073299	Stem 3	1.016
	CRR073300	Leaf 1	0.687
	CRR073301	Leaf 2	1.108
	CRR073302	Leaf 3	1.054
	CRR073303	Juvenile bud 1	0.653
	CRR073304	Juvenile bud 2	0.183
	CRR073305	Juvenile bud 3	0.995
	CRR073306	Third green 1	0.071
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.428
	CRR073310	Second white 2	0.072
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.221
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.243
	CRR073317	Gold flowering 3	0.143
	CRR073318	Tawny withering 1	1.594
	CRR073319	Tawny withering 2	2.223
	CRR073320	Tawny withering 3	0.795