Gene detail

Detail information of GWHGAAZE032505

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002308963.1	0	curculin-like lectin family protein [Populus trichocarpa]
COG	YP_001958461.1	0.000000001	hypothetical protein Aasi_1443
Swissprot	tr\|P93756\|SD31_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 (Precursor)
trEMBL	tr\|B9H9X2\|B9H9X2_POPTR	0	Curculin-like lectin family protein {ECO:0000313\|EMBL:EEE92486.1}
TAIR10	AT2G41890.1	0	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	3636619	3638889	+
GWHAAZE00000021	mRNA	3636619	3638889	+
GWHAAZE00000021	exon	3636619	3638889	+
GWHAAZE00000021	CDS	3636619	3638889	+

Transcript Sequence
>GWHTAAZE032543 ATGCTTGGTGGACAAGGGATATCACTCGCCAATTCGCCTTTCGTGTTCTTTCTCTTTCTCGAGTTCTTGCTTTTTCCAGTTTTCAGCTCACAAATTTCATTGGGTTCGAAACTTTCAATAGAAGAAAAGAACTTTTGGGTCTCTTCCAATGGGGATTTCGCAGTTGGGTTCTTTAACCGTTCGAATCAGTACAGTCTTGGGATCCGTTTCAATTCGCGTTCCATCCCAACCCATAAACAGATGGTGGTTTGGGCTGCTGGTGCTGATCTTACTGTTGGAGGGAAATCTTATTTTCAGCTGACACAAAATGGAGAACTAATTGTCTTCGATTCTACAAGGGGATCTGTTGCTTGGACAAGCAACACTACCAATTCAGCTGTGGCTTCAGCAGTTCTTGGTGACGATGGAAATCTTTTCCTCTTGAGCAAAAACAAAGGTATTGTTTGGCAAAGCTTCGATACTCCATCAGACACGCTTCTCCCAGGCCAGAATTTATCCGGGTCCCAATCGCTTCGAGCTGCTAGCAGGAACTCTCTCTCGAGTTATTACAGTCTTCATGTATTGGACCAACTGCAACTCAAGTGGGAAAGCAATGTCATATATTGGTCGAGTGGGAGTACTCAATCAATTCTGCGCACTATACTCGGCTCAGATGGATCCCTTCAGCTTCTTGACCAAAGATCTAAATCCGTTTGGTCAGTTTTCGGAGAAGATCACAGTGACCCAGATGTGAAATTCCGGTTTTTGAGGCTAGACGTTGATGGGAATCTTCGGTTGTACTCCTGGGTACAAGCTTCAAGCTCGTGGAGATCTGTTTGGCAAGCTGTTGAAAATCAGTGCAATGTGTTTGATACCTGTGGACTCTCTGGCATTTGTATCTTCAATGCATCGGGTTCCCCTGTTTGTAAATGCCCGTTTACGCCTACAAGTGAGTCTAATTCGAAATGCTTAGTTCCTTATAGACAGGATTGTAGATCTGGTTCCTCCATGGATACACTTGAACACACTTCGCTATATGCAGTTTATCCACTTAATGAAACAATTACACAAACTAGTTTGAAGCAATGTAAAAGCTTGTGTCAGCGAGATCCGCTTTGCTTTGCATCGACATTTACAAATGATGGGACTGCACAATGCCGTATGAAGAAAACTCAATACATAAGTGGTCACATGGACCCCTCTTTGAGTAATATATCTTTTGTTAAGAGGTGTTTGGATCCCATTGCTGTTTTCCCTGTAGCAAACACTACACAGTCCCCCTTACAAAACACTTTGCCAAAACGGGCCCAAAAGTTCTGTATTACTTGTCTAATAGGAGTGGCCGGGGGAGCATTTATTTTGTTTGTTCTAATTCAGTTCGGAATTGGCTTCTGGATATACAAGAGAAGAAAATCTCTAGGCCTGAAAGCTTCATCGGCATTTGTGGGTTCAAATCCAAACAGTTTTCTCGTACTATCATACGCAGAGATCAAGGACCTTACGGAGAATTTCAAACACCAAATTGGGTCGAAGATGTTTAAAGGCATTCTTGAAAACGAAAGGCCAGTCGCGGTCAAAGAACTGAATGCAACTATCGAAGAAAGAAAGTTCAGGTGCGCGGTTTTGAAAATAGGAAGCATTTCTCACAAAAGCCTTGTGAAGCTTGAGGGTTATTGTTGTGAGCCGGGTCATAGGATTTTGGTCTACGAGTTCGCCAAGAATGGATCCATAGCCGAGTGCTTAGAAGATCCCAAGATGTGCAAGAGGCTTACATGGAGAAAGAGAATGGAGATATGCTTAACTGTGGCAAGGGCCATTTCGTACTTGCATAATGATTGTAGAGAGTTTGTAAGCCACGGAAACTTAAAGTGCGAGAACGTTGTTTTGGACGAAAAAATGGAAGCCAAGGTGAGTGAATTTGGGTTATGCAGTGTTCTTGGTGACACCTCTGCTGAGTGGGATATACTAGATTTTGGCAAAATGGTGTTAAAATTAGTCACCGGACACAACAATGATGGTGATGTTGAGTGGGTGTATGAGAAATGGTCGGAAGGTGAGGCCAAGAGGGTAGCTGATGAAAGAATAGAAGACACGTTGGATTTAGATTCATTCGAACGCGTATTGAGAATTGCATTGTGGTGTTTGCAAAACGATGAGCGAATGAGGCCTTCGATGGGGGAGGTAGTGAAGGTATTAGAGGGAACACTGGCTGTTGATCCGCCGCCACCACCTTTTAGCCGGAGGCCGCTAGAGGAAGAAGAGCCAGAACCATCCGGGTCGGGTTCTGAATAG

Network for GWHGAAZE032505

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	82	169	1.50E-16
PF00954.21	S_locus_glycop	246	304	3.50E-10
PF07714.18	PK_Tyr_Ser-Thr	510	639	3.70E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_SD-2b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048544	biological_process	recognition of pollen
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.697
	SRR3591706	second leaf	4.656
	SRR3591707	mature leaf	0.376
	SRR3591708	Shoot apex	22.218
	SRR3591709	Stem	8.610
	SRR3591710	White floral bud	4.834
	SRR3591711	White flower	2.917
	SRR3591712	Green floral bud	3.216
	SRR3591713	Yellow flower	1.273
SRP173429	SRR8316895	Juvenile bud stage	3.672
	SRR8316896	Juvenile bud stage	2.248
	SRR8316897	Juvenile bud stage	1.031
	SRR8316894	Third green stage	1.788
	SRR8316900	Third green stage	1.968
	SRR8316901	Third green stage	1.537
	SRR8316898	Complete white stage	2.314
	SRR8316899	Complete white stage	5.112
	SRR8316903	Complete white stage	4.278
	SRR8316902	Silver flowering stage	0.803
	SRR8316904	Silver flowering stage	1.685
	SRR8316905	Silver flowering stage	0.816
	SRR8316906	Gold flowering stage	2.769
	SRR8316907	Gold flowering stage	2.755
	SRR8316908	Gold flowering stage	1.889
SRP132670	SRR6706286	Control	1.981
	SRR6706287	Light intensity 50%	2.573
	SRR6706288	Light intensity 20%	2.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.917
	CNS0095593	Slightly white alabastrum(diploid) 2	3.861
	CNS0095594	Slightly white alabastrum(diploid) 3	3.584
	CNS0095595	Whole white alabastrum(diploid) 2	2.744
	CNS0095596	Whole white alabastrum(diploid) 3	1.971
	CNS0095597	Whole white alabastrum(diploid) 4	1.827
	CNS0095598	Silvery flower (diploied) 1	4.182
	CNS0095599	Silvery flower (diploied) 2	2.257
	CNS0095600	Silvery flower (diploied) 3	3.700
	CNS0095601	Golden flower (diploid) 1	4.639
	CNS0095602	Golden flower (diploid) 2	3.115
	CNS0095603	Golden flower (diploid) 3	3.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.186
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.762
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.281
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.502
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.039
	CNS0095610	Silvery flower (diploied) 1	1.562
	CNS0095611	Silvery flower (diploied) 2	2.217
	CNS0095612	Silvery flower (diploied) 3	2.986
	CNS0095613	Golden flower (tetraploid) 1	0.507
	CNS0095614	Golden flower (tetraploid) 2	0.959
	CNS0095615	Golden flower (tetraploid) 3	0.942
CRA001975	CRR073297	Stem 1	10.966
	CRR073298	Stem 2	9.647
	CRR073299	Stem 3	11.484
	CRR073300	Leaf 1	5.413
	CRR073301	Leaf 2	4.545
	CRR073302	Leaf 3	4.483
	CRR073303	Juvenile bud 1	3.609
	CRR073304	Juvenile bud 2	2.905
	CRR073305	Juvenile bud 3	7.662
	CRR073306	Third green 1	3.259
	CRR073307	Third green 2	4.725
	CRR073308	Third green 3	3.361
	CRR073309	Second white 1	4.156
	CRR073310	Second white 2	3.427
	CRR073311	Second white 3	4.726
	CRR073312	Silver flowering 1	4.640
	CRR073313	Silver flowering 2	3.301
	CRR073314	Silver flowering 3	1.685
	CRR073315	Gold flowering 1	1.287
	CRR073316	Gold flowering 2	2.343
	CRR073317	Gold flowering 3	1.106
	CRR073318	Tawny withering 1	13.662
	CRR073319	Tawny withering 2	6.198
	CRR073320	Tawny withering 3	17.462