Gene detail

Detail information of GWHGAAZE032603

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009793032.1	0	PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Nicotiana sylvestris]
COG	YP_822039.1	2E-100	UBA/THIF-type NAD/FAD binding protein
Swissprot	tr\|Q9ZNW0\|MOCS3_ARATH	0	Molybdopterin-synthase sulfurtransferase {ECO:0000255\|HAMAP-Rule:MF_03049}
trEMBL	tr\|B9GJ37\|B9GJ37_POPTR	0	Adenylyltransferase and sulfurtransferase MOCS3 {ECO:0000256\|HAMAP-Rule:MF_03049}
TAIR10	AT5G55130.1	3E-167	co-factor for nitrate, reductase and xanthine dehydrogenase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000024	gene	348041	361210	+
GWHAAZE00000024	mRNA	348041	361210	+
GWHAAZE00000024	exon	348041	348296	+
GWHAAZE00000024	exon	350688	350780	+
GWHAAZE00000024	exon	350990	351045	+
GWHAAZE00000024	exon	352038	352132	+
GWHAAZE00000024	exon	352275	352349	+
GWHAAZE00000024	exon	352475	352553	+
GWHAAZE00000024	exon	353177	353215	+
GWHAAZE00000024	exon	353368	353476	+
GWHAAZE00000024	exon	359180	359298	+
GWHAAZE00000024	exon	360315	360431	+
GWHAAZE00000024	exon	360809	361210	+
GWHAAZE00000024	CDS	348041	348296	+
GWHAAZE00000024	CDS	350688	350780	+
GWHAAZE00000024	CDS	350990	351045	+
GWHAAZE00000024	CDS	352038	352132	+
GWHAAZE00000024	CDS	352275	352349	+
GWHAAZE00000024	CDS	352475	352553	+
GWHAAZE00000024	CDS	353177	353215	+
GWHAAZE00000024	CDS	353368	353476	+
GWHAAZE00000024	CDS	359180	359298	+
GWHAAZE00000024	CDS	360315	360431	+
GWHAAZE00000024	CDS	360809	361210	+

Transcript Sequence
>GWHTAAZE032641 ATGGAGTCCAACGTTGGAGGTGAGGCCTCTAGAATACTGCGCGAGATTGATTCATTGGAGTCTTCGAAGAAGGATATCGATCGCAAAATTTCACTTCTTGAATCACAGCTTCGCCAAATCCAATTGGAAGAGGAGAAGCCCAATTCAAATCCTTCAACAATAATAAACGAAGGATTCCAACATGGACATGGACTGTCCCCTGATATGATCTATAGATACAGTCGTCATCTCTTGCTTCCTTCTTTTGGTGTTCAAGGGCAGACAAATCTCGTCAAGTCTTCAGTTTTAGTTGTTGGAGCTGGAGGGTTGGGATCACCTGCTCTGTTATATCTTGCAGCTTGTGGTGTTGGTCGAATAGGTATTGTTGATCATGATGTAGTTGAACTTAACAATTTGCACAGGCAGGTTATCCACACTGAAGCATACATTGGCCGTTCTAAAGTGGAATCTGCTGCTGCTGCTTGTCGATTGTACGTCTCGTGCTTGCTCGTTATCCTATTGATTAACTCCACTATTCAGATCGTGGAATACAAAGAAGCTCTACGCACTTCCAATGCTTTGGAGATTATGAATAAATATGACGTAGTAATAGATGCAACTGACAATGTTCCTAGCCGTTACATGATCAATGATTGCTGTGTTGTGCTGGGAAAGCCTCTTGTATCAGGTGCTGCACTGGGACTGGAAGGGCAGCTCACAGTCTACAATTACAATGGAGGCCCATGCTACCGTTGCCTGTTTCCAACTCCACCACCGACAACAGCATGTCAAAGATGTTCTGACAGTGGTGTTCTAGGCGTTGTTCCTGGCATCATCGGCTGTCTCCAAGCCCTAGAAGCTATCAAGATCGCAAGCTGTGTTGGTGAGCCACTGTCAGGACGGATGCTTCTTTTTGATGCATTATCAGCTCGCATCCGTGTAGTAAAGATCAGAGGGAGATCATTGCAATGTGAAGCTTGTGGAGAAAGGGGATCATTTACACAACAAGAATTTCGAGATTTCGACTACGAAAGATTCACTCAGTCTCCCCTCTCAACGGTTCCATTGAAGTTGAATCTGATAGGGAAAGACAAGAGAATAAGTAGCAAGGAGTACAAAGAGAGAGTAGTGGAAAAAGGAGAAGCGCATGTGTTAGTGGACGTAAGACCCGCTCATCACTACAAAATTGTCTCTCTTCCCAATTCTTTGAATATCCCACTCTCGACTCTTCGAGATCGATTGCCCGAAATCTCTTTGGCATTAAACAAAGAAGAAGAATCGGTTTCGGATTCAGATAGAAGAAATGGTGGTGCTGGTTTGTATGTGGTATGTAGGAGAGGAAATGATTCACAGAGAGCTGTTGAAGAGCTTCACAAGCTGGGTTATACTTCAGCCAAGGATATCATTGGTGGACTTGAGTCTTGGGCCCATGATGTTGACCCTAACTTCCCTACTTATTAG

Network for GWHGAAZE032603

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	73	313	2.10E-57
PF00581.21	Rhodanese	363	470	6.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K11996	MOCS3, UBA4	Sulfur relay system	map04122

Gene Ontology

GO term	Ontology	Name
GO:0002143	biological_process	tRNA wobble position uridine thiolation
GO:0005829	cellular_component	cytosol
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity
GO:0004792	molecular_function	thiosulfate sulfurtransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.665
	SRR3591706	second leaf	2.005
	SRR3591707	mature leaf	1.713
	SRR3591708	Shoot apex	3.318
	SRR3591709	Stem	4.521
	SRR3591710	White floral bud	7.502
	SRR3591711	White flower	9.712
	SRR3591712	Green floral bud	5.845
	SRR3591713	Yellow flower	14.727
SRP173429	SRR8316895	Juvenile bud stage	2.581
	SRR8316896	Juvenile bud stage	3.297
	SRR8316897	Juvenile bud stage	6.995
	SRR8316894	Third green stage	1.462
	SRR8316900	Third green stage	4.234
	SRR8316901	Third green stage	3.684
	SRR8316898	Complete white stage	2.333
	SRR8316899	Complete white stage	8.297
	SRR8316903	Complete white stage	3.559
	SRR8316902	Silver flowering stage	1.855
	SRR8316904	Silver flowering stage	2.690
	SRR8316905	Silver flowering stage	0.743
	SRR8316906	Gold flowering stage	5.149
	SRR8316907	Gold flowering stage	4.301
	SRR8316908	Gold flowering stage	17.451
SRP132670	SRR6706286	Control	2.833
	SRR6706287	Light intensity 50%	3.263
	SRR6706288	Light intensity 20%	3.618
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.673
	CNS0095593	Slightly white alabastrum(diploid) 2	2.089
	CNS0095594	Slightly white alabastrum(diploid) 3	4.217
	CNS0095595	Whole white alabastrum(diploid) 2	2.607
	CNS0095596	Whole white alabastrum(diploid) 3	2.030
	CNS0095597	Whole white alabastrum(diploid) 4	2.169
	CNS0095598	Silvery flower (diploied) 1	3.260
	CNS0095599	Silvery flower (diploied) 2	3.839
	CNS0095600	Silvery flower (diploied) 3	5.746
	CNS0095601	Golden flower (diploid) 1	2.836
	CNS0095602	Golden flower (diploid) 2	4.811
	CNS0095603	Golden flower (diploid) 3	5.080
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.580
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.817
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.951
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.743
	CNS0095610	Silvery flower (diploied) 1	10.670
	CNS0095611	Silvery flower (diploied) 2	11.259
	CNS0095612	Silvery flower (diploied) 3	9.967
	CNS0095613	Golden flower (tetraploid) 1	5.623
	CNS0095614	Golden flower (tetraploid) 2	10.073
	CNS0095615	Golden flower (tetraploid) 3	10.225
CRA001975	CRR073297	Stem 1	6.199
	CRR073298	Stem 2	5.506
	CRR073299	Stem 3	6.995
	CRR073300	Leaf 1	6.038
	CRR073301	Leaf 2	4.524
	CRR073302	Leaf 3	4.460
	CRR073303	Juvenile bud 1	5.961
	CRR073304	Juvenile bud 2	4.730
	CRR073305	Juvenile bud 3	4.796
	CRR073306	Third green 1	1.757
	CRR073307	Third green 2	1.616
	CRR073308	Third green 3	2.346
	CRR073309	Second white 1	2.361
	CRR073310	Second white 2	2.783
	CRR073311	Second white 3	2.729
	CRR073312	Silver flowering 1	2.128
	CRR073313	Silver flowering 2	2.172
	CRR073314	Silver flowering 3	2.615
	CRR073315	Gold flowering 1	1.613
	CRR073316	Gold flowering 2	4.874
	CRR073317	Gold flowering 3	2.837
	CRR073318	Tawny withering 1	6.345
	CRR073319	Tawny withering 2	6.239
	CRR073320	Tawny withering 3	4.839