Gene detail

Detail information of GWHGAAZE032638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP36288.1	0	hypothetical protein JCGZ_09795 [Jatropha curcas]
COG	YP_008045770.1	1E-105	phosphoenolpyruvate carboxylase
Swissprot	tr\|Q9FV65\|CAPPC_FLATR	0	Phosphoenolpyruvate carboxylase 2
trEMBL	tr\|A0A067KMT6\|A0A067KMT6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP36288.1}
TAIR10	AT3G14940.1	0	phosphoenolpyruvate carboxylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000032	gene	82163	95718	+
GWHAAZE00000032	mRNA	82163	95718	+
GWHAAZE00000032	exon	82163	82243	+
GWHAAZE00000032	exon	83779	83980	+
GWHAAZE00000032	exon	84119	84164	+
GWHAAZE00000032	exon	84859	84943	+
GWHAAZE00000032	exon	86324	86402	+
GWHAAZE00000032	exon	87888	87991	+
GWHAAZE00000032	exon	88097	88185	+
GWHAAZE00000032	exon	88336	88379	+
GWHAAZE00000032	exon	89183	89337	+
GWHAAZE00000032	exon	90651	90767	+
GWHAAZE00000032	exon	90838	91171	+
GWHAAZE00000032	exon	91433	91565	+
GWHAAZE00000032	exon	91672	91894	+
GWHAAZE00000032	exon	92578	92961	+
GWHAAZE00000032	exon	95419	95718	+
GWHAAZE00000032	CDS	82163	82243	+
GWHAAZE00000032	CDS	83779	83980	+
GWHAAZE00000032	CDS	84119	84164	+
GWHAAZE00000032	CDS	84859	84943	+
GWHAAZE00000032	CDS	86324	86402	+
GWHAAZE00000032	CDS	87888	87991	+
GWHAAZE00000032	CDS	88097	88185	+
GWHAAZE00000032	CDS	88336	88379	+
GWHAAZE00000032	CDS	89183	89337	+
GWHAAZE00000032	CDS	90651	90767	+
GWHAAZE00000032	CDS	90838	91171	+
GWHAAZE00000032	CDS	91433	91565	+
GWHAAZE00000032	CDS	91672	91894	+
GWHAAZE00000032	CDS	92578	92961	+
GWHAAZE00000032	CDS	95419	95718	+

Transcript Sequence
>GWHTAAZE032676 ATGACTGCTGCTGGTGGTTCGAGGAACTTGGAGAAAATGTCGTCGATAGATGCGCAATTGAGGCTATTGGCACCTCGTAAGGTTCAAGACTGTTATGAGCTTTCAGCGGAGTATGAGGGCAATCTTGACCCCAATAAATTGGAAGAAATTGGAAGAGTGTTAACAAGTTTGGATGCCGGGGATTCTATTGTTGTTGCTAAGTCCTTCTCCCATATGCTTAACTTAGCTAACTTGGCTGAAGAGGTTCAGATAGCTTATAGGCGAAGGATTAAGCTGAAGAAAGGCATCCTACTCAATCTGTTCGTCGATCGTTGCTTCAGAAGCATAAGGATCCGGAATTGTTTGGCTCAGTTGTATGCTAAAGACATCACTCCTGATGATAAGCAGGAGCTAGATGAGGCTCTACAAAGAGAGAATATAGGCATAAATGAACGCGTTCCTTACAATGCCCCTCTTATTCAATTCTCTTCTTGGATGGGTGGGGATCGTGATGGAAATCCAAGGGTGACTCCTGAAGTTACAAGGGACGTATGCTTATTAGCTAGAATGATGGCTGCAAACTTGTACTTTTCCCAGATAGAGGATCTTATGTTTGAGCTATCGATGTGGCGCTGCAGTGATGAACTTCGTGGTCGTGCTGATGAACTTCACAGGTCCTCAAAGAGAGATCTGAAAACACTATATTGGTCCCAAGATCTCATCTTCTATGTTGCAAATATGAAATTTAAAGAGTTTTGGAAACAAGTCCCACCAAATGAGCCGTACCGTGTTATTCTTGGGGATGTGAGGGATAAGCTTTATAATACCCGTGAACGTTCTCGTCATTTGTTAGCCAATGGGACCTCTGATATTCTTGAGGAAGCAATATTTACTAATGTTGAACAGTTTCTGGAGCCACTAGAGCTCTGTTACAGATCACTCTGCTCTTGCGGTGACCGTCCTATTGCTGATGGAAGCCTTCTCGATTTCTTACGGCAAGTCTCCACCTTTGGTCTCTCCCTTAGATCGGTTCCTACCGAGAATGGTCCGAAGAACGGAGGCAACAATGGCTCTTATCCGAACCGGAGGCAACGCCCTCTATTCGGCCCTGATCTTCCCAAAACCGAAGAAATTGCTGATGTTTTAGACACCTTTAAAGTCATTTCCGAGCTCCCGTCTGATAACTTTGGGGCCTACATAATTTCAATGGCAACGGCCCCTTCTGATGTGCTTGCGGTTGAGCTTTTGCAACGTGAGTGCCATGTCATGAACCCGTTGAGGGTGGTCCCGTTGTTTGAAAAACTTGCTGATCTCGAGGCGGTCCGGCTGCTGTTGCTCGTCTATTCTCAATTGATTGGTACAAAAGCGAATCAATGGCAAGCAAGAAGTCATGCTCGGTACTCAGATTCGGGCAGGGCAGAGCCGTCTTCGGCTGCTTGGCAGTTATACAAGGCTCAAGAGGAGCTTGTAAAAGTGGCTAAGCAATTCGGGGTGGCGGTTCAAGGGAGGTTATTGAACAGTCTTTTGGGGAGGAGCATTTGTGTTTTAGAACGCTCCAACGTTTCACTGCAGCAGCTGGAGCATGGCATGCATCCTCCTATATCTCCAAAACCTGAATGGCGTGCACTCTTGGATGAGATGGCAGTCGTTGCTACAAAGGAATATCGGTCCATTGTTTTCCAAGAACCCCGATTTGTGGAATACTTCCGCCTTGCAGCGCCAGAGACAAATACGGTCATTATGAACATTGGCAGCCGTCCATCAAAGCGAAAGCCAAGTGGTGGAATCGAATCACCGAGCAATCCCGTGGATCTTTGCGTGGACCCAAAGCGAGGTTCCACCTCCGGTTTGGCTTGGGTTCGGTCCGCATTTAAGCACGTCATCGACAAGGATATAAGAAATCTCCAAATGCTTAAGGAGATGTATAATGAATGGCCTTTCTTTAGAGTGACAATTGATTTGGTTGAGATGGTTTTTGCTAAGGGAGACCCGGGGATTGCCGCTTTGTATGACAAACTCCTAGTGTCGGAAGAATTGTGGCCATTTGGAGAGCGCCTGAGGAAGATTTATGAAGAAACTAAGAGCTTTCTCCTCCAGATTGCGGGGCACAAGGACCTTCTCGAAGGAGACCCATACTTGAAGCAGAGACTCCGGCTACGAGATGCATACATCACAACCCTCAATGTGCTCCAAGCGTACACGCTTAAGAGTATCCGAGACCCGAGCTTTGATGTGAAGGTGAGGCCACATATCTCTAAAGAGATGATAAACGAGTCGAACAAACCAGCAGCTCAGCTTCTTAAGCTCAACCCTACGAGCGAGTATGCCCCTGGCTTGGAAGACACCCTTATCCTCACCATGAAGGGTATTGCTGCTGGAATGCAAAACACTGGTTGA

Network for GWHGAAZE032638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.18	PEPcase	122	336	3.90E-46
PF00311.18	PEPcase	493	791	1.30E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0015977	biological_process	carbon fixation
GO:0003824	molecular_function	catalytic activity
GO:0008964	molecular_function	phosphoenolpyruvate carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.546
	SRR3591706	second leaf	9.595
	SRR3591707	mature leaf	10.122
	SRR3591708	Shoot apex	4.961
	SRR3591709	Stem	10.275
	SRR3591710	White floral bud	5.185
	SRR3591711	White flower	7.054
	SRR3591712	Green floral bud	5.523
	SRR3591713	Yellow flower	6.582
SRP173429	SRR8316895	Juvenile bud stage	2.036
	SRR8316896	Juvenile bud stage	2.942
	SRR8316897	Juvenile bud stage	1.408
	SRR8316894	Third green stage	0.968
	SRR8316900	Third green stage	4.968
	SRR8316901	Third green stage	4.633
	SRR8316898	Complete white stage	1.648
	SRR8316899	Complete white stage	7.726
	SRR8316903	Complete white stage	1.874
	SRR8316902	Silver flowering stage	1.353
	SRR8316904	Silver flowering stage	1.395
	SRR8316905	Silver flowering stage	0.803
	SRR8316906	Gold flowering stage	2.224
	SRR8316907	Gold flowering stage	2.227
	SRR8316908	Gold flowering stage	2.316
SRP132670	SRR6706286	Control	5.058
	SRR6706287	Light intensity 50%	3.138
	SRR6706288	Light intensity 20%	5.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.285
	CNS0095593	Slightly white alabastrum(diploid) 2	3.201
	CNS0095594	Slightly white alabastrum(diploid) 3	2.182
	CNS0095595	Whole white alabastrum(diploid) 2	2.458
	CNS0095596	Whole white alabastrum(diploid) 3	2.778
	CNS0095597	Whole white alabastrum(diploid) 4	2.347
	CNS0095598	Silvery flower (diploied) 1	3.086
	CNS0095599	Silvery flower (diploied) 2	4.501
	CNS0095600	Silvery flower (diploied) 3	9.358
	CNS0095601	Golden flower (diploid) 1	3.907
	CNS0095602	Golden flower (diploid) 2	8.198
	CNS0095603	Golden flower (diploid) 3	8.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.850
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.773
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.145
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.808
	CNS0095610	Silvery flower (diploied) 1	9.986
	CNS0095611	Silvery flower (diploied) 2	10.075
	CNS0095612	Silvery flower (diploied) 3	6.633
	CNS0095613	Golden flower (tetraploid) 1	4.663
	CNS0095614	Golden flower (tetraploid) 2	11.054
	CNS0095615	Golden flower (tetraploid) 3	2.666
CRA001975	CRR073297	Stem 1	4.551
	CRR073298	Stem 2	2.974
	CRR073299	Stem 3	4.727
	CRR073300	Leaf 1	5.863
	CRR073301	Leaf 2	5.074
	CRR073302	Leaf 3	4.544
	CRR073303	Juvenile bud 1	7.707
	CRR073304	Juvenile bud 2	4.622
	CRR073305	Juvenile bud 3	11.629
	CRR073306	Third green 1	1.780
	CRR073307	Third green 2	2.222
	CRR073308	Third green 3	2.279
	CRR073309	Second white 1	3.688
	CRR073310	Second white 2	3.435
	CRR073311	Second white 3	3.027
	CRR073312	Silver flowering 1	2.138
	CRR073313	Silver flowering 2	2.664
	CRR073314	Silver flowering 3	2.527
	CRR073315	Gold flowering 1	7.725
	CRR073316	Gold flowering 2	9.579
	CRR073317	Gold flowering 3	11.443
	CRR073318	Tawny withering 1	8.483
	CRR073319	Tawny withering 2	16.916
	CRR073320	Tawny withering 3	6.630