Gene detail

Detail information of GWHGAAZE032872

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002314515.1	5.21005E-79	myb family transcription factor family protein [Populus trichocarpa]
Swissprot	tr\|Q9LK95\|MYB21_ARATH	3E-35	Transcription factor MYB21
trEMBL	tr\|B9HSV7\|B9HSV7_POPTR	2E-79	Myb family transcription factor family protein {ECO:0000313\|EMBL:EEF00686.1}
TAIR10	AT3G24310.1	3E-40	myb domain protein 305

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000054	gene	1763	3295	+
GWHAAZE00000054	mRNA	1763	3295	+
GWHAAZE00000054	exon	1763	1925	+
GWHAAZE00000054	exon	2605	2734	+
GWHAAZE00000054	exon	2977	3295	+
GWHAAZE00000054	CDS	1763	1925	+
GWHAAZE00000054	CDS	2605	2734	+
GWHAAZE00000054	CDS	2977	3295	+

Transcript Sequence
>GWHTAAZE032911 ATGTCTTCTTGGGGAGTGATGGGAGAGCAATTGGGGTGGGGAATGATGATGGAGGAATCAGGGTGGAGAAAGGGGCCATGGACTGCTGAAGAAGATAAGTTGCTTATTGAGTATGTCAAATTGCATGGTGAAGGAAGGTGGAACTCTGTTGCTAGGCTTGCTGGTTTAAAAAGGAATGGAAAAAGTTGTAGATTAAGGTGGGTGAATTACTTGAGGCCAGATCTGAAGAGGGGTCAAATAACTCCACATGAAGAAAGTATAATACTAGAGCTCCATGGTAGGTGGGGGAACAGGCAACAGTTCCAACTCCAACAACAGCAGCAGCAGCAGAACCAAGTGGACATGAAAAAGATCATGTCGTGGCTGGATGACAGTGACAACAAAGTGTCATTTCTACCTCAAGTGATGACCTCCGCGCTCTATCCCAACGCGGCTGAGGAGCAAGGGTTCTTCTGCTCCATGTTGAACGGCTCTGCGCCTGCGCCTGAGGCGTCGAATGAGGATATTTATTGGGATGGTTTGTGGAACTTAGACGATGTTCATGGCAATTTTGGTGTGGCAGCGTCCGCAACAAGAGCTGGTTTGCAGAGTTTAGCCACTCCTTTATTTTGA

Network for GWHGAAZE032872

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	24	71	9.80E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.196
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.292
	SRR3591711	White flower	0.037
	SRR3591712	Green floral bud	0.309
	SRR3591713	Yellow flower	0.350
SRP173429	SRR8316895	Juvenile bud stage	0.240
	SRR8316896	Juvenile bud stage	0.358
	SRR8316897	Juvenile bud stage	0.153
	SRR8316894	Third green stage	0.079
	SRR8316900	Third green stage	0.115
	SRR8316901	Third green stage	0.332
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.058
	SRR6706287	Light intensity 50%	0.081
	SRR6706288	Light intensity 20%	0.056
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.630
	CNS0095593	Slightly white alabastrum(diploid) 2	0.037
	CNS0095594	Slightly white alabastrum(diploid) 3	0.256
	CNS0095595	Whole white alabastrum(diploid) 2	0.070
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.046
	CNS0095603	Golden flower (diploid) 3	0.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.236
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.163
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.560
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.089
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.742
	CRR073298	Stem 2	0.813
	CRR073299	Stem 3	0.762
	CRR073300	Leaf 1	0.327
	CRR073301	Leaf 2	0.372
	CRR073302	Leaf 3	0.949
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.132
	CRR073305	Juvenile bud 3	0.284
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000