Gene detail

Detail information of GWHGAAZE032886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHJ08573.1	0	PDH2 [Helianthus tuberosus]
COG	YP_004989451.1	7E-60	proline dehydrogenase
Swissprot	tr\|P92983\|PROD1_ARATH	3E-180	Proline dehydrogenase 1, mitochondrial (Precursor)
trEMBL	tr\|W6E4V4\|W6E4V4_HELTU	0	PDH2 {ECO:0000313\|EMBL:AHJ08573.1}
TAIR10	AT3G30775.1	1E-142	Methylenetetrahydrofolate reductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000056	gene	173791	176438	+
GWHAAZE00000056	mRNA	173791	176438	+
GWHAAZE00000056	exon	173791	174255	+
GWHAAZE00000056	exon	175163	175811	+
GWHAAZE00000056	exon	175935	175967	+
GWHAAZE00000056	exon	176068	176308	+
GWHAAZE00000056	exon	176393	176438	+
GWHAAZE00000056	CDS	173791	174255	+
GWHAAZE00000056	CDS	175163	175811	+
GWHAAZE00000056	CDS	175935	175967	+
GWHAAZE00000056	CDS	176068	176308	+
GWHAAZE00000056	CDS	176393	176438	+

Transcript Sequence
>GWHTAAZE032925 ATGGCCCTCCGTCGTATCTCCCCAAACTTCCTCCAAAAACTCATCTTCTCCGCCAGACACGTCAGCTCCTCCTCCTCAGCCACGTCACCCAATCTGGACGATGTGGGGGGGCTGTTCACGTCCGTACCAACGTCAAAGCTGATAAAATCGTCGGTGACGCTCCACATGGCGGCGATTGGGCCGATGGTGGATTTGGGCGCGTGGGTGATGAACTCGAGGCTGATGGAGACTGCTATCGTGCGCGGGTTGATATTGGGCACCATTAAGGGCACGTTTTATGACCATTTCTGTGCGGGTCCGGGTATGGAGGATGTGGGTCGGACCGTGAAAAAGCTTTGGGAAGTCGGGTTGAAAGGGATGTTGGATTACGGGTTGGAGCATGCTGTCGACAATGAGTCTTGTGATCGCAATTTGGAGGAGTTTGTTCAGACAGTTGAATCTGCCAAATCTCTTCCTCCATCTTCTGTTAGCTTTGTGGTAGTGAAGATCACTGCAATTTGCCCAGTTAGTCTCCTTAAGCGAATTAGCGATCTATTAAGATGGGAGTACAATAACCCATCTTCCCATTCCCGATTCAAGATCAACGACATGCTTCCAATTTTCGCTGATTCGAGCCCTTTTTATCATACGCTTGAAAAACCAGATGCATTAACGCAACAAGAAGAGCAAGATCTTCACCTAGCCCACCAAAGACTCCGAATTATAAGCGAAAAATGCCTCGAATCCAACATCCCACTTTTACTTGATGCAGAGGACACATCAATTCAACCCGCGATTGATTACTTCACATACTCTGCAGCTATTATGTACAACAAAGGCGAAACTCCAATCATTTTCGGTACACTTCAAGCTTATTTAAAAGATGCGAAAGAAAGGTTGTTATTGGTAAAGAAAGCTGCTGATAAAATGGGATTGCCATTGGGGATTAAATTGGTGAGGGGAGCTTATATTGCAAGCGAAAGGAAATTAGCTGCTTCTTTGGGCGTTGAGTCCCCAGTTCACAATAGCATTGAGGAAACACACGCTTCGTATAATGATTGCGCCTCTTTCTTGCTTGAGGAGATTAGTAATGGCTCTGGCGCGGTTGTTCTTGCTACCCACAATGTCGAATCAGAAAATGTTGCTGGTACACATAATGCTGAATCAGGGAAATTGGCGTCTGCAAAAGCACGAGATTTGGGGATTGGGAAGGGAAATAAAAGCGTGCAATTCGCGCAACTATATGGAATGGCGGATTCGCTTTCGTTTGGATTGAGAAATGCTGGATTTGAAGTGAGCAAATATCTGCCATTTGGACCAATAGAGCAAATTCTGCCTTATCTTTTAAGGAGAGCTGAAGAGAACAAAGGGATGTTATCTTCTTCAACCCATGACAGAAAACTTATGTGGAAGGAGTTGCAGAGGAGACTAAAAGCAAAAGCTACGGTTGTATAA

Network for GWHGAAZE032886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01619.19	Pro_dh	107	454	1.70E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00318	PRODH, fadM, putB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.428
	SRR3591706	second leaf	1.084
	SRR3591707	mature leaf	3.179
	SRR3591708	Shoot apex	2.831
	SRR3591709	Stem	8.242
	SRR3591710	White floral bud	22.071
	SRR3591711	White flower	5.800
	SRR3591712	Green floral bud	22.790
	SRR3591713	Yellow flower	7.537
SRP173429	SRR8316895	Juvenile bud stage	7.689
	SRR8316896	Juvenile bud stage	20.441
	SRR8316897	Juvenile bud stage	6.413
	SRR8316894	Third green stage	6.094
	SRR8316900	Third green stage	20.116
	SRR8316901	Third green stage	19.781
	SRR8316898	Complete white stage	6.763
	SRR8316899	Complete white stage	10.518
	SRR8316903	Complete white stage	9.900
	SRR8316902	Silver flowering stage	3.691
	SRR8316904	Silver flowering stage	3.926
	SRR8316905	Silver flowering stage	2.036
	SRR8316906	Gold flowering stage	5.769
	SRR8316907	Gold flowering stage	6.826
	SRR8316908	Gold flowering stage	4.262
SRP132670	SRR6706286	Control	18.016
	SRR6706287	Light intensity 50%	17.887
	SRR6706288	Light intensity 20%	18.412
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.043
	CNS0095593	Slightly white alabastrum(diploid) 2	12.196
	CNS0095594	Slightly white alabastrum(diploid) 3	21.726
	CNS0095595	Whole white alabastrum(diploid) 2	27.200
	CNS0095596	Whole white alabastrum(diploid) 3	32.330
	CNS0095597	Whole white alabastrum(diploid) 4	39.173
	CNS0095598	Silvery flower (diploied) 1	6.194
	CNS0095599	Silvery flower (diploied) 2	8.723
	CNS0095600	Silvery flower (diploied) 3	11.849
	CNS0095601	Golden flower (diploid) 1	9.612
	CNS0095602	Golden flower (diploid) 2	13.937
	CNS0095603	Golden flower (diploid) 3	13.168
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.925
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.112
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.426
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.815
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.808
	CNS0095610	Silvery flower (diploied) 1	9.135
	CNS0095611	Silvery flower (diploied) 2	11.664
	CNS0095612	Silvery flower (diploied) 3	10.391
	CNS0095613	Golden flower (tetraploid) 1	5.015
	CNS0095614	Golden flower (tetraploid) 2	9.105
	CNS0095615	Golden flower (tetraploid) 3	9.266
CRA001975	CRR073297	Stem 1	9.254
	CRR073298	Stem 2	12.237
	CRR073299	Stem 3	11.798
	CRR073300	Leaf 1	13.428
	CRR073301	Leaf 2	11.411
	CRR073302	Leaf 3	9.855
	CRR073303	Juvenile bud 1	9.536
	CRR073304	Juvenile bud 2	7.463
	CRR073305	Juvenile bud 3	4.523
	CRR073306	Third green 1	5.149
	CRR073307	Third green 2	6.254
	CRR073308	Third green 3	5.364
	CRR073309	Second white 1	1.849
	CRR073310	Second white 2	5.351
	CRR073311	Second white 3	3.697
	CRR073312	Silver flowering 1	6.741
	CRR073313	Silver flowering 2	4.536
	CRR073314	Silver flowering 3	3.959
	CRR073315	Gold flowering 1	2.256
	CRR073316	Gold flowering 2	1.156
	CRR073317	Gold flowering 3	0.437
	CRR073318	Tawny withering 1	4.374
	CRR073319	Tawny withering 2	3.281
	CRR073320	Tawny withering 3	4.597