Gene detail

Detail information of GWHGAAZE032975

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010650717.1	1.8472E-145	PREDICTED: (+)-neomenthol dehydrogenase isoform X1 [Vitis vinifera]
COG	YP_003888420.1	9E-40	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	7E-55	(+)-neomenthol dehydrogenase
trEMBL	tr\|F6HB25\|F6HB25_VITVI	7E-146	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49394.1}
TAIR10	AT3G59710.1	1E-75	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000079	gene	27940	34247	+
GWHAAZE00000079	mRNA	27940	34247	+
GWHAAZE00000079	exon	27940	28040	+
GWHAAZE00000079	exon	28835	29093	+
GWHAAZE00000079	exon	32773	32955	+
GWHAAZE00000079	exon	33852	34247	+
GWHAAZE00000079	CDS	27940	28040	+
GWHAAZE00000079	CDS	28835	29093	+
GWHAAZE00000079	CDS	32773	32955	+
GWHAAZE00000079	CDS	33852	34247	+

Transcript Sequence
>GWHTAAZE033014 ATGAATGGCCCCCACAGAACCTTAGCTGCCTCCATCTCTCAGGCTTTCAATCACGGACTTTGGTCTCTAGAAGCAATTTCAATGCATTTTGAGAATTTAGAATGGTGGTCAAAGGATACAGTGGCCATAGTCACGGGAGCAAACAAGGGTATAGGGTTTGCACTGGTGAAAAGACTAGCAGAGCTTGGACTTTCAGTTGTATTAACATCAAGAGATATTCAAAAGGGACTATTGGCTGTTGACTCCCTCAAAAGTGTGGGACTATATGTACACTTTTGCCCTCTTGATGTATCTCAGCCTTCTTCCATCAAAGCATTCTCTTCCTGGCTGCATCACAATTTTGGAGGCTTGGATATACTTGTGAATAATGCAGCGGTATCATTCAATGAAATAAATGAGAATTCAGTGGAGCATGCAGAGATAGTGATAAAGACTAATTTCTATGGTTCCAAGCTTCTTATTGAGTCCCTTTTGCCTTTATTTCGCTTCTCTCCTTCTTCAAGCCGGATCCTTAATATTAGCTCCAGACTCGGCTTGTTAAACAAGCTGAAAAACCCCAAAATCAAAGAAACATTGATGAACGAAGAGACATTAACAGAAGAGAAAATAGAGGGGATGGTGTGTTTGTTTCTCGAGAATGTGAAGAACGGGACATGGATAAACCAAGGGTGGCCTGAGTTATGGACAGATTATGCTGTCTCAAAGCTTGCCTTGAATTCTTATTCCAATCTTTTGGCTAAAAAGTACAAGGGGAGGGGCCTAAGTGTAAATTGCTTTTGTCCTGGTTTCACTCAGACCTCAATGACTAACGGCCAGGGAACTCACACCGCGGCGGAGGCCGCTGAAATGGTGGCTGCGCTGGCATTGCTGCCGCCAGAGAAACTGCCCACTGGAAAATTCTATCTTGGGTCTAGCCGTGGTGTATTATCTAAGTTGTAG

Network for GWHGAAZE032975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	41	179	3.10E-27
PF00106.26	adh_short	227	272	8.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00079	CBR1	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Folate biosynthesis	map00790
		Metabolism of xenobiotics by cytochrome P450	map00980

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.059
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.176
	SRR3591708	Shoot apex	0.329
	SRR3591709	Stem	0.088
	SRR3591710	White floral bud	1.308
	SRR3591711	White flower	0.153
	SRR3591712	Green floral bud	6.537
	SRR3591713	Yellow flower	0.623
SRP173429	SRR8316895	Juvenile bud stage	21.628
	SRR8316896	Juvenile bud stage	15.977
	SRR8316897	Juvenile bud stage	5.615
	SRR8316894	Third green stage	3.461
	SRR8316900	Third green stage	2.719
	SRR8316901	Third green stage	3.884
	SRR8316898	Complete white stage	0.070
	SRR8316899	Complete white stage	0.151
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.221
	SRR8316904	Silver flowering stage	0.582
	SRR8316905	Silver flowering stage	0.421
	SRR8316906	Gold flowering stage	0.819
	SRR8316907	Gold flowering stage	0.132
	SRR8316908	Gold flowering stage	0.670
SRP132670	SRR6706286	Control	2.443
	SRR6706287	Light intensity 50%	3.068
	SRR6706288	Light intensity 20%	2.788
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.653
	CNS0095593	Slightly white alabastrum(diploid) 2	13.856
	CNS0095594	Slightly white alabastrum(diploid) 3	17.375
	CNS0095595	Whole white alabastrum(diploid) 2	0.754
	CNS0095596	Whole white alabastrum(diploid) 3	2.478
	CNS0095597	Whole white alabastrum(diploid) 4	0.447
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.165
	CNS0095600	Silvery flower (diploied) 3	0.335
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.007
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.460
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.374
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.327
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	20.959
	CRR073298	Stem 2	15.207
	CRR073299	Stem 3	24.643
	CRR073300	Leaf 1	1.383
	CRR073301	Leaf 2	1.507
	CRR073302	Leaf 3	2.780
	CRR073303	Juvenile bud 1	0.092
	CRR073304	Juvenile bud 2	0.832
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.899
	CRR073307	Third green 2	4.569
	CRR073308	Third green 3	1.108
	CRR073309	Second white 1	0.581
	CRR073310	Second white 2	0.042
	CRR073311	Second white 3	0.231
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000