Gene detail

Detail information of GWHGAAZE033047

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004230391.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Solanum lycopersicum]
COG	YP_004775215.1	7E-34	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LT96\|Y5977_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A022R0W1\|A0A022R0W1_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU33238.1}
TAIR10	AT5G49760.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000089	gene	44939	55376	+
GWHAAZE00000089	mRNA	44939	55376	+
GWHAAZE00000089	exon	44939	45011	+
GWHAAZE00000089	exon	45649	45769	+
GWHAAZE00000089	exon	46549	46623	+
GWHAAZE00000089	exon	46703	46774	+
GWHAAZE00000089	exon	48530	48691	+
GWHAAZE00000089	exon	48790	48864	+
GWHAAZE00000089	exon	49903	49974	+
GWHAAZE00000089	exon	50074	50145	+
GWHAAZE00000089	exon	50237	50305	+
GWHAAZE00000089	exon	50579	50650	+
GWHAAZE00000089	exon	50789	50923	+
GWHAAZE00000089	exon	51070	51237	+
GWHAAZE00000089	exon	51472	51956	+
GWHAAZE00000089	exon	52313	52459	+
GWHAAZE00000089	exon	52543	52679	+
GWHAAZE00000089	exon	53009	53228	+
GWHAAZE00000089	exon	53902	54137	+
GWHAAZE00000089	exon	54981	55376	+
GWHAAZE00000089	CDS	44939	45011	+
GWHAAZE00000089	CDS	45649	45769	+
GWHAAZE00000089	CDS	46549	46623	+
GWHAAZE00000089	CDS	46703	46774	+
GWHAAZE00000089	CDS	48530	48691	+
GWHAAZE00000089	CDS	48790	48864	+
GWHAAZE00000089	CDS	49903	49974	+
GWHAAZE00000089	CDS	50074	50145	+
GWHAAZE00000089	CDS	50237	50305	+
GWHAAZE00000089	CDS	50579	50650	+
GWHAAZE00000089	CDS	50789	50923	+
GWHAAZE00000089	CDS	51070	51237	+
GWHAAZE00000089	CDS	51472	51956	+
GWHAAZE00000089	CDS	52313	52459	+
GWHAAZE00000089	CDS	52543	52679	+
GWHAAZE00000089	CDS	53009	53228	+
GWHAAZE00000089	CDS	53902	54137	+
GWHAAZE00000089	CDS	54981	55376	+

Transcript Sequence
>GWHTAAZE033086 ATGGGTCAAAGAATTCCGTTCTGTCTTCTGGTTATTTCCATCCAAATTTTAGTCATAGCAGCACAGAGTGATTCTACTTATCTATTGGCTCTAAAGGATATATGGGAGAACACACCACCCAGTTGGGTCGGCACGGATCCATGTGGAGATCGCTGGGAGGGAATTGGTTGCACCAATTCACGTGTTACTTCAATGGATCTGTCATACAATACAGGTTTGAATGGATCTATTCCTCCATCAATTGGAAATTTGAGGAAGTTATCAAACTTAATCCTGATTGGTTGCGGTTTCACCGGTCTAATTCCAGACTCGATAGGATCTCTTAAGCAGCTGGTCTATTTGTCTCTAAATAGTAATGGCTTCAGTGGACCAATACCGCCTTCAATTGGTAATCTAACTAATCTTTATTGGTTGGATTTGGCCGATAATGAGCTTAGCGGACCCATACCAGTTTCTAATGGAAGCAGGCCTGGACTCGATATGCTGGTTAAAACAAAGCACTTTCATTTTGGAAAGAATCGGCTTTCTGGTGAGATCCCAAGTCAGCTCTTCAGCTCGTCTATGAAGTTAATACATTTGCTTTTAGAAAACAACCAGCTCACCGGTAGCATCCCTTCCACACTAGGACTTGTGCAGACCTTGGAGGTTGTTCGTCTCGATAGGAATTTGTTAACTGGACCTGTTCCATCAAACATCAACAACCTTAGCAGTGTCAGTGATCTGTTCCTGTCCAATAATAGACTGACTGGCGCGTTACCCAATCTTACGGGTATGGACTTCCTCCACTATGTAATGTTGCAAAACACAAGACTTCAAGGATCAGTACCAGTTGCACTCTTTACCGCTCCTCAATTACAGACTGTTGTATTGAGAAATAACCAGCTTAATGGCACCTTGGATATTGGTTCCAGCTATAGCACCCAACTTCAAGAGGTTGACTTGCAGAATAATTTCATCAGTAGCTTCACACAAAGGGCGGGATACAATATTGGGTTAAATCACGAGTGGCTGGCAAGCTCAAGAACCGCCGTTGCCCGCCCACCGCCGGAGCTACGACGACTTCGTCGGAGCTCAAGTGACCACCCAATCCACCCCGAATTCCAAATCATCACTCTCTTTGGCAACCTCAGTATTTGTGTCTCTCGGGTGGAATTTCTTTGGGAGGGACTTTCTGGTAACCCTGTTTGTGTGGAAGAAGGAGCAATAGATAAAAAATACTGTAACTTTACTCAACGGCCTAATGGCTCGTATTCAACATTACCAAGAAATTGTGTGCCTAGTACCTGCAGCTCAAAGCAAATTTCGAGCCCGAATTGTCAATGTGCATATCCGTACACAGGGAAAATATCATTTAGAGCTCGTAAGTTTTCCAGCCTGGGAAATTCGAGTATTTACATTTCTCTTGAAGAACGTATGATGGTTTCTTTTCAGTCCTATCGACTCCCAGTGGATTCGGTCTCTCTGAAAAATCCGACGACAGATCTTGACGATTACCTTGTAATAAGCCTTGAAATTTTTCCATTCGGCCAAGGTTATTTCAATCGAACAGGAGTTAGTGCAATTGGATTTGTGCTTAGCAACCAAACTTTTAAGCCTCCCCCAGATTTTGGACCTTTCTTTTTCATTGGCGATGGCTATCAGTACTTTTCAGCACACAAGTCATCATCAAATACCAGCATTATCATCGGAGCAGCAACTAGTGGTGCTGGCCTTTTGCTATTACTACTACTTGCAGGATTTTATGCTTATCGTCAAAAGAGAAGGGCTGAAAGAGCTGATCATCAGAACAATCCCTTCGCAGTGTGGGACCCAACTAAAAACAGTGGCGGTGTTCCTCAGTTGAAAGGAGCAAGGTCTTTCTCATTTGAAGAGCTTAATAAATACACAAATAATTTTTCAGAAACCAACAATATTGGATCCGGCGGCTATGGAATGGTATATAGAGGAAATCTTCCCAATGGGCAACTGATTGCCATTAAAAGAGCTGTACAAGGGTCTACGCAGGGTGTCCTCGAGTTTAAAACTGAGATTGAGCTCCTTTCGCGGGTTCATCACAAAAATGTTGTCAGCCTCGTGGGTTTCTGTTTCGCGCATGGTGAACAGATGCTGATATACGAGTATATTCCAAATGGTACACTCAAGGACAATCTTTTAGGGAAGACTGGAATCAAGTTGGACTGGGCAAGAAGACTTAGAATAGCCCTTGGAGCGGCAAGAGGTTTGCAATATTTGCATGACCTTGCCAACCCTCCCATCATACACCGGGACATCAAATCGAACAATATCTTACTAGACGAACGCTTGAATGCGAAAGTTGCTGACTTCGGTCTCTCTAAGCCAATGGACGACCCTGAGAAGGGTCATGTTACCACTCAAGTCAAAGGGACAATGTTAATAACAGCGAGACCTCCAATACATCAAGGGAAGTATATTGTAAAAGAGGTGAGGCAATCAATGGACAGAACAAAAGATCTATACAACCTTCAAGGAGTTCTCGACCCCACCATTGGCCAGTTCACTGATCTTAGGGGCTTAGAGAAATTCATTGACATTTCAATGAGGTGTGTTGAAGAGGCCGGGGCCGACAGACCCTCGATGAGCGAGGTGGTGAAAGAGATAGAGAACGCCATGGAAATGGTGGGCTTGAATCCGAATGTTGAATCGGCTTCGACTTCGACTTCAGCAAGTTATGAAGGGGTAAGTAAGGGATATGAGCATCCTTATAGTAATGAAAGCCTTTTTGTTTATAGTGGTGCTTATATCCCTTCAAAGTTGGAGCCCAAGTGA

Network for GWHGAAZE033047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	635	793	1.90E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.161
	SRR3591706	second leaf	3.426
	SRR3591707	mature leaf	8.409
	SRR3591708	Shoot apex	5.459
	SRR3591709	Stem	7.159
	SRR3591710	White floral bud	2.379
	SRR3591711	White flower	3.249
	SRR3591712	Green floral bud	1.235
	SRR3591713	Yellow flower	3.600
SRP173429	SRR8316895	Juvenile bud stage	1.728
	SRR8316896	Juvenile bud stage	2.728
	SRR8316897	Juvenile bud stage	0.313
	SRR8316894	Third green stage	1.053
	SRR8316900	Third green stage	2.184
	SRR8316901	Third green stage	2.069
	SRR8316898	Complete white stage	0.831
	SRR8316899	Complete white stage	3.584
	SRR8316903	Complete white stage	1.391
	SRR8316902	Silver flowering stage	0.709
	SRR8316904	Silver flowering stage	1.641
	SRR8316905	Silver flowering stage	0.451
	SRR8316906	Gold flowering stage	1.563
	SRR8316907	Gold flowering stage	1.121
	SRR8316908	Gold flowering stage	0.864
SRP132670	SRR6706286	Control	2.065
	SRR6706287	Light intensity 50%	2.073
	SRR6706288	Light intensity 20%	1.671
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.514
	CNS0095593	Slightly white alabastrum(diploid) 2	1.255
	CNS0095594	Slightly white alabastrum(diploid) 3	0.931
	CNS0095595	Whole white alabastrum(diploid) 2	0.970
	CNS0095596	Whole white alabastrum(diploid) 3	0.652
	CNS0095597	Whole white alabastrum(diploid) 4	0.937
	CNS0095598	Silvery flower (diploied) 1	1.959
	CNS0095599	Silvery flower (diploied) 2	1.461
	CNS0095600	Silvery flower (diploied) 3	1.391
	CNS0095601	Golden flower (diploid) 1	2.218
	CNS0095602	Golden flower (diploid) 2	2.353
	CNS0095603	Golden flower (diploid) 3	3.056
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.110
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.880
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.544
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.848
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.874
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.285
	CNS0095610	Silvery flower (diploied) 1	2.968
	CNS0095611	Silvery flower (diploied) 2	4.657
	CNS0095612	Silvery flower (diploied) 3	2.848
	CNS0095613	Golden flower (tetraploid) 1	1.475
	CNS0095614	Golden flower (tetraploid) 2	2.875
	CNS0095615	Golden flower (tetraploid) 3	1.296
CRA001975	CRR073297	Stem 1	1.911
	CRR073298	Stem 2	1.465
	CRR073299	Stem 3	0.598
	CRR073300	Leaf 1	2.272
	CRR073301	Leaf 2	1.740
	CRR073302	Leaf 3	0.774
	CRR073303	Juvenile bud 1	0.592
	CRR073304	Juvenile bud 2	0.342
	CRR073305	Juvenile bud 3	0.648
	CRR073306	Third green 1	0.118
	CRR073307	Third green 2	0.170
	CRR073308	Third green 3	0.263
	CRR073309	Second white 1	0.211
	CRR073310	Second white 2	0.332
	CRR073311	Second white 3	0.432
	CRR073312	Silver flowering 1	0.346
	CRR073313	Silver flowering 2	0.106
	CRR073314	Silver flowering 3	0.006
	CRR073315	Gold flowering 1	0.742
	CRR073316	Gold flowering 2	1.655
	CRR073317	Gold flowering 3	0.449
	CRR073318	Tawny withering 1	3.898
	CRR073319	Tawny withering 2	3.158
	CRR073320	Tawny withering 3	2.202