Detail information of GWHGAAZE033168


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011074356.10PREDICTED: eukaryotic initiation factor 4A-3-like [Sesamum indicum]
COGYP_007250064.13E-95DNA/RNA helicase, superfamily II
Swissprottr|P41380|IF4A3_NICPL0Eukaryotic initiation factor 4A-3
trEMBLtr|F6HHF5|F6HHF5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51651.1}
TAIR10AT3G19760.10eukaryotic initiation factor 4A-III

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene23845582389102+
GWHAAZE00000094mRNA23845582389102+
GWHAAZE00000094exon23845582384874+
GWHAAZE00000094exon23868872387127+
GWHAAZE00000094exon23872622387342+
GWHAAZE00000094exon23878052387912+
GWHAAZE00000094exon23880382388157+
GWHAAZE00000094exon23883572388515+
GWHAAZE00000094exon23887612388847+
GWHAAZE00000094exon23889892389102+
GWHAAZE00000094CDS23845582384874+
GWHAAZE00000094CDS23868872387127+
GWHAAZE00000094CDS23872622387342+
GWHAAZE00000094CDS23878052387912+
GWHAAZE00000094CDS23880382388157+
GWHAAZE00000094CDS23883572388515+
GWHAAZE00000094CDS23887612388847+
GWHAAZE00000094CDS23889892389102+
Transcript Sequence

Network for GWHGAAZE033168

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0227GO:0019904 protein domain specific binding GOslim:molecular_function
Ubiquitin_DWD family Ubiquitin_DWD family
map03015 mRNA surveillance pathway
map03040 Spliceosome
map03013 RNA transport


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD632251.70E-41
PF00271.32Helicase_C2643696.10E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13025EIF4A3, FAL1 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.040
SRR3591706second leaf3.611
SRR3591707mature leaf2.234
SRR3591708Shoot apex22.861
SRR3591709Stem5.975
SRR3591710White floral bud9.969
SRR3591711White flower8.454
SRR3591712Green floral bud12.016
SRR3591713Yellow flower1.264
SRP173429 SRR8316895Juvenile bud stage 22.675
SRR8316896Juvenile bud stage 38.514
SRR8316897Juvenile bud stage 5.750
SRR8316894Third green stage 15.025
SRR8316900Third green stage 40.757
SRR8316901Third green stage 35.018
SRR8316898Complete white stage 9.627
SRR8316899Complete white stage 41.335
SRR8316903Complete white stage 12.791
SRR8316902Silver flowering stage4.813
SRR8316904Silver flowering stage6.132
SRR8316905Silver flowering stage1.903
SRR8316906Gold flowering stage 7.150
SRR8316907Gold flowering stage 6.372
SRR8316908Gold flowering stage 3.454
SRP132670SRR6706286Control39.949
SRR6706287Light intensity 50%41.136
SRR6706288Light intensity 20%42.357
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.709
CNS0095593Slightly white alabastrum(diploid) 231.096
CNS0095594Slightly white alabastrum(diploid) 328.557
CNS0095595Whole white alabastrum(diploid) 231.849
CNS0095596Whole white alabastrum(diploid) 331.193
CNS0095597Whole white alabastrum(diploid) 423.218
CNS0095598Silvery flower (diploied) 119.470
CNS0095599Silvery flower (diploied) 216.227
CNS0095600Silvery flower (diploied) 322.437
CNS0095601Golden flower (diploid) 119.594
CNS0095602Golden flower (diploid) 220.854
CNS0095603Golden flower (diploid) 317.981
CNS0095604Slightly white alabastrum(tetraploid) 128.940
CNS0095605Slightly white alabastrum(tetraploid) 222.755
CNS0095606Slightly white alabastrum(tetraploid) 341.200
CNS0095607Whole white alabastrum(tetraploid) 116.991
CNS0095608Whole white alabastrum(tetraploid) 216.071
CNS0095609Whole white alabastrum(tetraploid) 330.544
CNS0095610Silvery flower (diploied) 113.688
CNS0095611Silvery flower (diploied) 216.641
CNS0095612Silvery flower (diploied) 312.035
CNS0095613Golden flower (tetraploid) 110.114
CNS0095614Golden flower (tetraploid) 211.722
CNS0095615Golden flower (tetraploid) 37.194
CRA001975CRR073297Stem 134.083
CRR073298Stem 229.532
CRR073299Stem 334.706
CRR073300Leaf 136.982
CRR073301Leaf 231.210
CRR073302Leaf 335.574
CRR073303Juvenile bud 131.804
CRR073304Juvenile bud 227.105
CRR073305Juvenile bud 327.169
CRR073306Third green 13.803
CRR073307Third green 24.242
CRR073308Third green 35.003
CRR073309Second white 15.464
CRR073310Second white 27.372
CRR073311Second white 39.112
CRR073312Silver flowering 16.241
CRR073313Silver flowering 27.503
CRR073314Silver flowering 36.825
CRR073315Gold flowering 13.027
CRR073316Gold flowering 22.838
CRR073317Gold flowering 32.955
CRR073318Tawny withering 14.784
CRR073319Tawny withering 24.136
CRR073320Tawny withering 33.812