Detail information of GWHGAAZE033213


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI34985.32.49394E-77unnamed protein product [Vitis vinifera]
COGYP_006179981.12E-26M10 family peptidase
Swissprottr|P29136|MEP1_SOYBN5E-37Metalloendoproteinase 1 (Precursor)
trEMBLtr|A0A022R3Z5|A0A022R3Z5_ERYGU1E-68Uncharacterized protein {ECO:0000313|EMBL:EYU34694.1} (Fragment)
TAIR10AT1G70170.14E-22matrix metalloproteinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene30100033010925-
GWHAAZE00000094mRNA30100033010925-
GWHAAZE00000094exon30105723010925-
GWHAAZE00000094exon30100033010338-
GWHAAZE00000094CDS30105723010925-
GWHAAZE00000094CDS30100033010338-
Transcript Sequence

Network for GWHGAAZE033213

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0165GO:0031012 extracellular matrix GOslim:cellular_component
GO:0008237 metallopeptidase activity GOslim:molecular_function
GO:0004222 metalloendopeptidase activity GOslim:molecular_function
GO:0006508 proteolysis GOslim:biological_process
GO:0008270 zinc ion binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01471.19PG_binding_1531123.30E-13
PF00413.25Peptidase_M101222279.80E-37
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006508biological_processproteolysis
GO:0031012cellular_componentextracellular matrix
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0004222molecular_functionmetalloendopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.177
SRR3591707mature leaf2.136
SRR3591708Shoot apex0.188
SRR3591709Stem0.197
SRR3591710White floral bud1.943
SRR3591711White flower0.506
SRR3591712Green floral bud1.726
SRR3591713Yellow flower0.638
SRP173429 SRR8316895Juvenile bud stage 0.197
SRR8316896Juvenile bud stage 0.620
SRR8316897Juvenile bud stage 0.192
SRR8316894Third green stage 0.193
SRR8316900Third green stage 0.736
SRR8316901Third green stage 0.828
SRR8316898Complete white stage 1.969
SRR8316899Complete white stage 2.363
SRR8316903Complete white stage 0.471
SRR8316902Silver flowering stage0.421
SRR8316904Silver flowering stage0.579
SRR8316905Silver flowering stage0.308
SRR8316906Gold flowering stage 2.356
SRR8316907Gold flowering stage 0.642
SRR8316908Gold flowering stage 1.437
SRP132670SRR6706286Control2.474
SRR6706287Light intensity 50%2.011
SRR6706288Light intensity 20%1.142
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.222
CNS0095593Slightly white alabastrum(diploid) 20.110
CNS0095594Slightly white alabastrum(diploid) 30.383
CNS0095595Whole white alabastrum(diploid) 20.141
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.266
CNS0095599Silvery flower (diploied) 20.280
CNS0095600Silvery flower (diploied) 30.764
CNS0095601Golden flower (diploid) 10.421
CNS0095602Golden flower (diploid) 20.265
CNS0095603Golden flower (diploid) 30.443
CNS0095604Slightly white alabastrum(tetraploid) 10.090
CNS0095605Slightly white alabastrum(tetraploid) 20.124
CNS0095606Slightly white alabastrum(tetraploid) 30.129
CNS0095607Whole white alabastrum(tetraploid) 10.032
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 10.320
CNS0095611Silvery flower (diploied) 20.000
CNS0095612Silvery flower (diploied) 30.177
CNS0095613Golden flower (tetraploid) 10.632
CNS0095614Golden flower (tetraploid) 21.942
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.054
CRR073298Stem 20.139
CRR073299Stem 30.000
CRR073300Leaf 10.039
CRR073301Leaf 20.105
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.046
CRR073305Juvenile bud 30.093
CRR073306Third green 10.080
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.209
CRR073310Second white 20.253
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.283
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.118
CRR073317Gold flowering 30.125
CRR073318Tawny withering 11.525
CRR073319Tawny withering 23.420
CRR073320Tawny withering 30.125