Gene detail

Detail information of GWHGAAZE033275

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278600.1	1.8284E-126	PREDICTED: THUMP domain-containing protein 1 isoform X1 [Vitis vinifera]
trEMBL	tr\|D7SNG3\|D7SNG3_VITVI	7E-127	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17192.3}
TAIR10	AT5G12410.1	5E-84	THUMP domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4073020	4076437	-
GWHAAZE00000094	mRNA	4073020	4076437	-
GWHAAZE00000094	exon	4073020	4073097	-
GWHAAZE00000094	exon	4073452	4073592	-
GWHAAZE00000094	exon	4074332	4074452	-
GWHAAZE00000094	exon	4074583	4074722	-
GWHAAZE00000094	exon	4075934	4076437	-
GWHAAZE00000094	CDS	4075934	4076437	-
GWHAAZE00000094	CDS	4074583	4074722	-
GWHAAZE00000094	CDS	4074332	4074452	-
GWHAAZE00000094	CDS	4073452	4073592	-
GWHAAZE00000094	CDS	4073020	4073097	-

Transcript Sequence
>GWHTAAZE033314 ATGAATACCTTTAACTCACCACCCCTGTCTTCTCTTGAGCAGTTTTATGAAGAGCTAGTTAATGGGACAGCTTCAAAAAGAAAGCTTGAAGAGTTACCAAATAAACCCGTGAATAAGAAAATTAAATTTGCATATTCTGATTCTGATGATGACAATGACAATGAAAATGGTGATGCTCAAAACGATAAAGAGGACGAAGAACAAAGAGGTACTGATATTGCGAGAGATGCAAATGATGGAAGTTTAGAAAACGAAGAGTCGGATCCTCAGAAGGAGGAAGGCAAGTGCTGTGAGAATAAAACAGAAGGAAATAGAGATGCTGATACCGAGGATGGTAAAAATCATGAAAATAAAGAAGCTAAAGCTGACGAGCAAGCAGCAAAGGAACAATGCTTAGAAAAAGATGCAGCAAAGTTTGAAAAAGTTATATCTGATAAAAGGGATGAAATATCTATTGATAAGCTAATTGAAGCTGAACTTGAAGAGTTGAAAGACAAGAGCAAGAGGCTTTTTAACAACCTTGATTCTGGTTGCAACGGCGTTATCTTTATCCAAATGCGAAAGAGGGATGGAGACCCCAGCCCAAGTGATATTGTTCAACACATGATGACATCTGTTGCCTCAACAAGGAAACACATGTCAAGGTTCATTTTAAGAGTGTTACCTGTCGAAGTGACATGCTATCCATCAGAGGAAGAAATTTCAAGGGCTATAAAACCCCTCATTGAGCGATACTTCCCTGCAGAAACTCAGACCCCACAGAAGTTTGCAGTATTGTATGAAGCCCGTGCAAATACTGGTGTCGATAGGATGAAAATCATCAATGCAGTAGCAAAATCCATTCCTGAACCTCACAAAGTTGATCTTAACAATCCTGACAGGAGCATTGTGGTTCAAATTGCCAGGACGGTGTGTTCGATTGGGGTTGTTGAGAAGTACAAGGAATTGGCCAAGTACAATCTGAGGCAGCTCCAGTCATCCAAA

Network for GWHGAAZE033275

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02926.18	THUMP	213	310	9.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006400	biological_process	tRNA modification
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.401
	SRR3591706	second leaf	14.551
	SRR3591707	mature leaf	17.237
	SRR3591708	Shoot apex	25.412
	SRR3591709	Stem	18.165
	SRR3591710	White floral bud	26.417
	SRR3591711	White flower	26.717
	SRR3591712	Green floral bud	32.457
	SRR3591713	Yellow flower	14.857
SRP173429	SRR8316895	Juvenile bud stage	18.949
	SRR8316896	Juvenile bud stage	23.037
	SRR8316897	Juvenile bud stage	5.328
	SRR8316894	Third green stage	10.443
	SRR8316900	Third green stage	26.010
	SRR8316901	Third green stage	22.973
	SRR8316898	Complete white stage	8.616
	SRR8316899	Complete white stage	29.663
	SRR8316903	Complete white stage	10.992
	SRR8316902	Silver flowering stage	7.567
	SRR8316904	Silver flowering stage	12.075
	SRR8316905	Silver flowering stage	4.292
	SRR8316906	Gold flowering stage	10.535
	SRR8316907	Gold flowering stage	11.562
	SRR8316908	Gold flowering stage	9.952
SRP132670	SRR6706286	Control	12.093
	SRR6706287	Light intensity 50%	13.930
	SRR6706288	Light intensity 20%	14.381
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.036
	CNS0095593	Slightly white alabastrum(diploid) 2	19.174
	CNS0095594	Slightly white alabastrum(diploid) 3	19.838
	CNS0095595	Whole white alabastrum(diploid) 2	14.746
	CNS0095596	Whole white alabastrum(diploid) 3	15.541
	CNS0095597	Whole white alabastrum(diploid) 4	17.259
	CNS0095598	Silvery flower (diploied) 1	18.046
	CNS0095599	Silvery flower (diploied) 2	13.962
	CNS0095600	Silvery flower (diploied) 3	16.626
	CNS0095601	Golden flower (diploid) 1	12.124
	CNS0095602	Golden flower (diploid) 2	10.539
	CNS0095603	Golden flower (diploid) 3	13.785
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.924
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.369
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.553
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.834
	CNS0095610	Silvery flower (diploied) 1	25.745
	CNS0095611	Silvery flower (diploied) 2	27.036
	CNS0095612	Silvery flower (diploied) 3	20.261
	CNS0095613	Golden flower (tetraploid) 1	14.812
	CNS0095614	Golden flower (tetraploid) 2	18.949
	CNS0095615	Golden flower (tetraploid) 3	9.902
CRA001975	CRR073297	Stem 1	20.829
	CRR073298	Stem 2	16.875
	CRR073299	Stem 3	14.050
	CRR073300	Leaf 1	19.398
	CRR073301	Leaf 2	16.881
	CRR073302	Leaf 3	12.291
	CRR073303	Juvenile bud 1	15.844
	CRR073304	Juvenile bud 2	10.747
	CRR073305	Juvenile bud 3	14.418
	CRR073306	Third green 1	2.012
	CRR073307	Third green 2	2.134
	CRR073308	Third green 3	2.247
	CRR073309	Second white 1	3.581
	CRR073310	Second white 2	5.630
	CRR073311	Second white 3	3.855
	CRR073312	Silver flowering 1	2.733
	CRR073313	Silver flowering 2	3.538
	CRR073314	Silver flowering 3	3.829
	CRR073315	Gold flowering 1	5.462
	CRR073316	Gold flowering 2	7.392
	CRR073317	Gold flowering 3	2.134
	CRR073318	Tawny withering 1	8.819
	CRR073319	Tawny withering 2	11.481
	CRR073320	Tawny withering 3	14.350