Gene detail

Detail information of GWHGAAZE033308

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGV54412.1	2.5024E-135	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2 [Phaseolus vulgaris]
COG	YP_742174.1	7E-81	succinate dehydrogenase iron-sulfur subunit
Swissprot	tr\|Q8LB02\|SDHB2_ARATH	6E-127	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (Precursor)
trEMBL	tr\|T2DNK1\|T2DNK1_PHAVU	9E-136	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial {ECO:0000256\|RuleBase:RU361237}
TAIR10	AT5G40650.1	2E-104	succinate dehydrogenase 2-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4528466	4539392	+
GWHAAZE00000094	mRNA	4528466	4539392	+
GWHAAZE00000094	exon	4528466	4529130	+
GWHAAZE00000094	exon	4533813	4533945	+
GWHAAZE00000094	exon	4534626	4534715	+
GWHAAZE00000094	exon	4534813	4534919	+
GWHAAZE00000094	exon	4535045	4535087	+
GWHAAZE00000094	exon	4535316	4535433	+
GWHAAZE00000094	exon	4535543	4535592	+
GWHAAZE00000094	exon	4535909	4535998	+
GWHAAZE00000094	exon	4537066	4537203	+
GWHAAZE00000094	exon	4539150	4539392	+
GWHAAZE00000094	CDS	4528466	4529130	+
GWHAAZE00000094	CDS	4533813	4533945	+
GWHAAZE00000094	CDS	4534626	4534715	+
GWHAAZE00000094	CDS	4534813	4534919	+
GWHAAZE00000094	CDS	4535045	4535087	+
GWHAAZE00000094	CDS	4535316	4535433	+
GWHAAZE00000094	CDS	4535543	4535592	+
GWHAAZE00000094	CDS	4535909	4535998	+
GWHAAZE00000094	CDS	4537066	4537203	+
GWHAAZE00000094	CDS	4539150	4539392	+

Transcript Sequence
>GWHTAAZE033347 ATGGCGACTGGTTTAGTCCGTAGAGCCATATCTAGGGTTCAGTCCTCGCCGGCGGCGAAACTCATCCTCACACGAGCCCACGCCTCCGGAGCTCAGGCTCAAATGGTCGAGCCGACGTCCCGACCCGAAACCAACCTCAAGACCTTCCAAATATACCGTTGGAGTCCCGACAACCCGACAAAACCGGAGCTAAAGGACTACAAGATCGATTTAAAGGAGTGTGGACCCATGGTCCTCGACGCTCTCATCAAGATCAAGAACGAGATCGATCCAACGCTCACTTTTCGACGATCGTGCCGAGAGGGGATATGCGGGTCGTGCGCGATGAACATCGACGGCTGTAATGGGTTGGCATGTTTGACGAAGATAGAATCGGGAAAAGAATCATCGACGGTGACGCCGTTGCCACATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTATAAGAGTATCGAGCCTTGGTTGAAGAGGAAGAGTCCGGCTAATAAACAAGGAAAGGAGATTTTGCAGAGTAAGAAGGATAGGGCCAAGTTGGATGGGATGTATGAGTGCATACTGTGTGCCTGCTGTAGCACATCCTGTCCTAGTTACTGGTGGAACCCTGAGTCTTACCTTGGCCCTGCTGCTCTTCTCCATGCCAATCGTGTTGTTGGGCTGAATTTCGATTTTGTGTTGCTGAATTTGACCAAGCACTCCTCTTATCTCATCTACAACGCCTCCGTCTTCTTTAGCTCTGCTATTCATAGGCAATACCGCAAGAAATATGGCCCTAATGAGATGATACCTGTAGCTGCAAATGATGTAGCTTTCTCAATCCATGCTGTTATACTGACTGCTTTTACCTTGGTCCAAATTGCAATATATGATCGTGGGAACCAGAGGGTTTCAAGGACTAATATGGGAATAGTCTCGGCTGCCTGGTTAGCTGTTGCTGTTTGCATCTTTGTAGCTTTGCCAAGCCAGTCCTGGCTTTGCACATTGCAAGTTGTTATGACAGTCATCAAATATATTCCCCAGGTTGTTATGAATTTCCGGCGAAAGAGCACTGTAGGATTTAGCATTGGCAACATATTGCTTGATTTACTTGGAGGTTTAACAAATTATGGTCAGATGGTTGTGCAGTCTGTGGATCAACATTCCTGGGTTAATTTCTATGGAAATATAGGAAAGACATTGCTATCTTTGGTGTCTATCTTCTTTGACTTAATCTTCATCTTGCAACATTACGTGCTATATCCTGCCAAGAAAAGTGTGATCTCTACTAATATTGATGCGCCTGGTTGTTCACTAAGGTCTCGAGAAAGCCCACCAACCACTCAAAGTTCACGGGCAAGTGTGGCCAGCCTGAGTGCTCTGGCTGTCATTTACACCCGGCTTGCAGGTCAAAGGACAAGTTCAGGGGCAAACAAAAGCGATCTGGTGGCGGATATGACGAATTTTTATAATCAGTATAAGAGAATTGAGCCTTGGTTGAAAAGGAAGAGTCCGGCTAATAAACAAGGAAAGGAGATTTTGCAGAGGAAGAAGGATAGGGCCAAGTTGGAAGGGATGTATGAGTGCATACTGTGTGCATGCTGTACCACATCCTGTCCTAGTTACTGGTGGAACCCTGAGTCTTACCTTGGCCCTGCTGCTCTTCTCCATGCCAATCGGTAA

Network for GWHGAAZE033308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13085.7	Fer2_3	48	152	1.30E-32
PF04193.15	PQ-loop	332	385	1.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00235	SDHB, SDH2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0055114	biological_process	oxidation-reduction process
GO:0051536	molecular_function	iron-sulfur cluster binding
GO:0009055	molecular_function	electron transfer activity
GO:0051537	molecular_function	2 iron, 2 sulfur cluster binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.893
	SRR3591706	second leaf	8.277
	SRR3591707	mature leaf	6.586
	SRR3591708	Shoot apex	6.528
	SRR3591709	Stem	4.664
	SRR3591710	White floral bud	15.341
	SRR3591711	White flower	20.903
	SRR3591712	Green floral bud	10.348
	SRR3591713	Yellow flower	7.161
SRP173429	SRR8316895	Juvenile bud stage	8.421
	SRR8316896	Juvenile bud stage	17.383
	SRR8316897	Juvenile bud stage	7.320
	SRR8316894	Third green stage	8.152
	SRR8316900	Third green stage	33.451
	SRR8316901	Third green stage	38.500
	SRR8316898	Complete white stage	24.322
	SRR8316899	Complete white stage	43.340
	SRR8316903	Complete white stage	36.843
	SRR8316902	Silver flowering stage	41.493
	SRR8316904	Silver flowering stage	44.764
	SRR8316905	Silver flowering stage	25.694
	SRR8316906	Gold flowering stage	48.808
	SRR8316907	Gold flowering stage	44.959
	SRR8316908	Gold flowering stage	57.247
SRP132670	SRR6706286	Control	33.174
	SRR6706287	Light intensity 50%	28.050
	SRR6706288	Light intensity 20%	25.609
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.157
	CNS0095593	Slightly white alabastrum(diploid) 2	12.203
	CNS0095594	Slightly white alabastrum(diploid) 3	10.462
	CNS0095595	Whole white alabastrum(diploid) 2	15.856
	CNS0095596	Whole white alabastrum(diploid) 3	14.591
	CNS0095597	Whole white alabastrum(diploid) 4	13.299
	CNS0095598	Silvery flower (diploied) 1	25.879
	CNS0095599	Silvery flower (diploied) 2	27.898
	CNS0095600	Silvery flower (diploied) 3	100.654
	CNS0095601	Golden flower (diploid) 1	25.224
	CNS0095602	Golden flower (diploid) 2	58.718
	CNS0095603	Golden flower (diploid) 3	56.466
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.434
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.667
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.123
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.826
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.491
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.347
	CNS0095610	Silvery flower (diploied) 1	159.826
	CNS0095611	Silvery flower (diploied) 2	138.264
	CNS0095612	Silvery flower (diploied) 3	29.017
	CNS0095613	Golden flower (tetraploid) 1	67.472
	CNS0095614	Golden flower (tetraploid) 2	108.089
	CNS0095615	Golden flower (tetraploid) 3	21.625
CRA001975	CRR073297	Stem 1	12.123
	CRR073298	Stem 2	13.019
	CRR073299	Stem 3	14.280
	CRR073300	Leaf 1	26.218
	CRR073301	Leaf 2	32.800
	CRR073302	Leaf 3	24.549
	CRR073303	Juvenile bud 1	52.569
	CRR073304	Juvenile bud 2	40.619
	CRR073305	Juvenile bud 3	54.089
	CRR073306	Third green 1	83.293
	CRR073307	Third green 2	67.060
	CRR073308	Third green 3	73.258
	CRR073309	Second white 1	69.600
	CRR073310	Second white 2	72.414
	CRR073311	Second white 3	48.409
	CRR073312	Silver flowering 1	23.308
	CRR073313	Silver flowering 2	34.129
	CRR073314	Silver flowering 3	29.063
	CRR073315	Gold flowering 1	40.496
	CRR073316	Gold flowering 2	35.377
	CRR073317	Gold flowering 3	26.310
	CRR073318	Tawny withering 1	12.505
	CRR073319	Tawny withering 2	18.427
	CRR073320	Tawny withering 3	11.510