Gene detail

Detail information of GWHGAAZE033325

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097322.1	0	PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Sesamum indicum]
COG	YP_004042509.1	1E-172	glyceraldehyde-3-phosphate dehydrogenase
Swissprot	tr\|P26519\|G3PC_PETCR	0	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
trEMBL	tr\|A0A022R7D6\|A0A022R7D6_ERYGU	0	Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256\|RuleBase:RU361160}
TAIR10	AT1G13440.1	2E-167	glyceraldehyde-3-phosphate dehydrogenase C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4817657	4821256	+
GWHAAZE00000094	mRNA	4817657	4821256	+
GWHAAZE00000094	exon	4817657	4817684	+
GWHAAZE00000094	exon	4817790	4817890	+
GWHAAZE00000094	exon	4819218	4819333	+
GWHAAZE00000094	exon	4819427	4819526	+
GWHAAZE00000094	exon	4819926	4820072	+
GWHAAZE00000094	exon	4820183	4820243	+
GWHAAZE00000094	exon	4820332	4820429	+
GWHAAZE00000094	exon	4820539	4820681	+
GWHAAZE00000094	exon	4820800	4820883	+
GWHAAZE00000094	exon	4821007	4821096	+
GWHAAZE00000094	exon	4821211	4821256	+
GWHAAZE00000094	CDS	4817657	4817684	+
GWHAAZE00000094	CDS	4817790	4817890	+
GWHAAZE00000094	CDS	4819218	4819333	+
GWHAAZE00000094	CDS	4819427	4819526	+
GWHAAZE00000094	CDS	4819926	4820072	+
GWHAAZE00000094	CDS	4820183	4820243	+
GWHAAZE00000094	CDS	4820332	4820429	+
GWHAAZE00000094	CDS	4820539	4820681	+
GWHAAZE00000094	CDS	4820800	4820883	+
GWHAAZE00000094	CDS	4821007	4821096	+
GWHAAZE00000094	CDS	4821211	4821256	+

Transcript Sequence
>GWHTAAZE033364 ATGGCAAAAATCAAGATTGGAATCAATGGCTTTGGAAGGATCGGGCGTTTGGTGGCTAGAGTTGCTCTACAGAGTGATGATGTTGAACTTGTTGCGGTTAATGATCCATTCATCACCACCGATTACATGACCTACATGTTCAAATACGACAGTGTTCATGGCCAATGGAAAAAGCATGAGCTTAAGGTTAAGGATTCCAAGACTCTTCTGTTTGGGGATAGACCTGTCTCTGTCTTTGGCATGAAAAATCCTGAGGAGATCCCTTGGGGTGAAGCTGGAGCCGAGTTTGTTGTGGAGTCCACAGGAGTTTTTACTGATAAGGACAAAGCTGCTGCCCACTTGAAGGGCGGTGCAAAGAAGGTTGTCATTTCTGCTCCAAGTGCGAATGCTCCCATGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGTCAGATATTGACATCGTTTCCAATGCTAGTTGCACTACCAACTGTCTTGCTCCATTGGCAAAGGTTATTAATGACAAATTTGGTATCATTGAGGGTCTTATGACAACTGTTCACTCTATCACCGCAACACAGAAGACCGTTGATGGCCCATCAATGAAGGATTGGAGAGGTGGAAGAGCTGCTTCTTTCAACATAATTCCCAGCAGTACTGGAGCTGCCAAGGCTGTAGGGAAAGTTCTGCCTGCACTCAATGGAAAGCTGACTGGGATGGCCTTCCGTGTTCCCACTGTTGATGTCTCAGTGGTTGACCTCACTGCAAGGCTTGAGAAGGCAGCCTCGTATGATGAGATTAAGGCTGCTATCAAGTCTGAGGCTGAGGGTAGCATGAAAGGGATCCTTGGTTACACTGAGGACGATGTTGTGTCGACCGACTTTGTGGGTGATTGCAGGTCAAGTATATTTGATGCAAAGGCTGGCATTGCTTTGAATGGTAACTTTGTGAAGGTTGTCTCTTGGTACGATAATGAATGGGGTTACAGTAACCGTGTGATTGACTTGATTAGGCACATGGCCTCTACTAAATGA

Network for GWHGAAZE033325

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00044.25	Gp_dh_N	4	107	2.30E-33
PF02800.21	Gp_dh_C	159	316	1.70E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00134	GAPDH, gapA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Carbon fixation in photosynthetic organisms	map00710
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0006006	biological_process	glucose metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661	molecular_function	NADP binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	132.667
	SRR3591706	second leaf	26.692
	SRR3591707	mature leaf	6.226
	SRR3591708	Shoot apex	52.050
	SRR3591709	Stem	43.121
	SRR3591710	White floral bud	116.934
	SRR3591711	White flower	23.539
	SRR3591712	Green floral bud	592.083
	SRR3591713	Yellow flower	10.969
SRP173429	SRR8316895	Juvenile bud stage	148.321
	SRR8316896	Juvenile bud stage	342.957
	SRR8316897	Juvenile bud stage	153.160
	SRR8316894	Third green stage	127.154
	SRR8316900	Third green stage	452.004
	SRR8316901	Third green stage	466.407
	SRR8316898	Complete white stage	5.533
	SRR8316899	Complete white stage	31.210
	SRR8316903	Complete white stage	7.348
	SRR8316902	Silver flowering stage	3.416
	SRR8316904	Silver flowering stage	5.572
	SRR8316905	Silver flowering stage	1.553
	SRR8316906	Gold flowering stage	2.899
	SRR8316907	Gold flowering stage	3.789
	SRR8316908	Gold flowering stage	4.886
SRP132670	SRR6706286	Control	179.230
	SRR6706287	Light intensity 50%	191.059
	SRR6706288	Light intensity 20%	188.661
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	255.813
	CNS0095593	Slightly white alabastrum(diploid) 2	188.638
	CNS0095594	Slightly white alabastrum(diploid) 3	303.246
	CNS0095595	Whole white alabastrum(diploid) 2	258.569
	CNS0095596	Whole white alabastrum(diploid) 3	344.038
	CNS0095597	Whole white alabastrum(diploid) 4	223.540
	CNS0095598	Silvery flower (diploied) 1	17.466
	CNS0095599	Silvery flower (diploied) 2	27.880
	CNS0095600	Silvery flower (diploied) 3	9.427
	CNS0095601	Golden flower (diploid) 1	10.790
	CNS0095602	Golden flower (diploid) 2	6.937
	CNS0095603	Golden flower (diploid) 3	6.293
	CNS0095604	Slightly white alabastrum(tetraploid) 1	487.119
	CNS0095605	Slightly white alabastrum(tetraploid) 2	430.051
	CNS0095606	Slightly white alabastrum(tetraploid) 3	91.692
	CNS0095607	Whole white alabastrum(tetraploid) 1	515.557
	CNS0095608	Whole white alabastrum(tetraploid) 2	596.249
	CNS0095609	Whole white alabastrum(tetraploid) 3	494.937
	CNS0095610	Silvery flower (diploied) 1	8.712
	CNS0095611	Silvery flower (diploied) 2	8.189
	CNS0095612	Silvery flower (diploied) 3	20.902
	CNS0095613	Golden flower (tetraploid) 1	1.082
	CNS0095614	Golden flower (tetraploid) 2	4.593
	CNS0095615	Golden flower (tetraploid) 3	2.883
CRA001975	CRR073297	Stem 1	184.552
	CRR073298	Stem 2	181.253
	CRR073299	Stem 3	155.361
	CRR073300	Leaf 1	195.963
	CRR073301	Leaf 2	217.860
	CRR073302	Leaf 3	269.073
	CRR073303	Juvenile bud 1	224.927
	CRR073304	Juvenile bud 2	252.105
	CRR073305	Juvenile bud 3	59.889
	CRR073306	Third green 1	25.788
	CRR073307	Third green 2	34.980
	CRR073308	Third green 3	23.989
	CRR073309	Second white 1	4.367
	CRR073310	Second white 2	3.086
	CRR073311	Second white 3	4.014
	CRR073312	Silver flowering 1	20.194
	CRR073313	Silver flowering 2	23.117
	CRR073314	Silver flowering 3	9.599
	CRR073315	Gold flowering 1	23.865
	CRR073316	Gold flowering 2	6.991
	CRR073317	Gold flowering 3	17.378
	CRR073318	Tawny withering 1	50.429
	CRR073319	Tawny withering 2	38.902
	CRR073320	Tawny withering 3	51.544