Gene detail

Detail information of GWHGAAZE033482

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP23802.1	2.1475E-145	hypothetical protein JCGZ_00134 [Jatropha curcas]
COG	YP_004180201.1	0.0000002	serine/threonine protein kinase
Swissprot	tr\|Q9FNE1\|CRK42_ARATH	4E-51	Cysteine-rich receptor-like protein kinase 42 (Precursor)
trEMBL	tr\|A0A067JIV9\|A0A067JIV9_JATCU	8E-146	Uncharacterized protein {ECO:0000313\|EMBL:KDP23802.1}
TAIR10	AT1G29720.1	1E-45	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	899148	902893	+
GWHAAZE00000104	mRNA	899148	902893	+
GWHAAZE00000104	exon	899148	899499	+
GWHAAZE00000104	exon	899696	899821	+
GWHAAZE00000104	exon	900463	900590	+
GWHAAZE00000104	exon	901234	901444	+
GWHAAZE00000104	exon	901781	901820	+
GWHAAZE00000104	exon	901912	902062	+
GWHAAZE00000104	exon	902576	902893	+
GWHAAZE00000104	CDS	899148	899499	+
GWHAAZE00000104	CDS	899696	899821	+
GWHAAZE00000104	CDS	900463	900590	+
GWHAAZE00000104	CDS	901234	901444	+
GWHAAZE00000104	CDS	901781	901820	+
GWHAAZE00000104	CDS	901912	902062	+
GWHAAZE00000104	CDS	902576	902893	+

Transcript Sequence
>GWHTAAZE033521 ATGGGATTATGCGGAAATCAAGCAGCTTCTCAGGCGACCGTATTTGCTACCACGGTACAAGGGTTGTTAACAGACCTCGTTGTTGCAACTCCTAGGATTAACGGTTATTTTGCTGCGACTACTAGGTCGGCAGTTGGCGCGGATTTAACGGTGTATGCAGTGGCGCAGTGTGCCCAAACAGTTAGTAGTAGTGGGTGCTTAAATTGCTTGAGAGTGGCACGCAACAATATTCAGAGTTGCCCTCCTGATGCTGATGCAAGGGCCGTTGATGCTGGTTGTTTCTTGAGGTATTCTAATACCTCTTTTTTTCCTGCCAACCAAACAACTAATATCACTCCTTTCTTGGGTGGAGGACGTTCATCAAACAAGAAGAAAGCCATAATTGGGGGTGTGGGTGGTGGTGGGGGGTTTCTTTTGCTCATACTTGCTTTCTTTTTGTGGTATACTCTATCAAAGAAGCCCAATGATGCTATAAGAGGAAATACATTGGGGGCAACAGAGCTACGAGGCGCACATAATTATAGTTACCGAGATTTGAAATCAGCTACCAAAAATTTTAGTCAAGAATACAAATTAGGAGAAGGTGGCTTTGGAGAAGTGTTCAAGGGAATACTAAAGAATGGGAATGTAGTGGCAGTGAAGAGAATAACAATGTCCTCAAGCAGAGCAAATAAAGAATTTGAAAGTGAAGTTAGGCTAATAAGCAATGTTCATCATCGAAATCTCATCCGTCTATTAGGATGTTGCAGCAAATCTTCAAAGCTTTTTCTTGTCCTAGAATACATGGCCAATGGTAGCCTTGATAAACTTTTGTTCGGGGATCAGAGCCACGTCAGCAGCAAATTTGCAGGGACTTTGGGTTATACTGCACCAGAATATGCAATTCATGGACGCTTGTCCGAAAAAGTTGATACATACAGTTTTGGTGTTGTGGTACTTGAGATTATAAGTGGAAGAAGGTGCACTGAGATCCAAGATGAACCTCAATCTGATTACCTCCTTGAAAATGCATGGAAACTGCATGAGAATGACATGCATTTGAAGCTAGTAGATGAGACACTAGACCCAAATGAATACACACCAGAAGAGGCAAAGAAGATCATTGAAATTGCTCTTATGTGCACTCAATCACCTGTTTCTTTGAGGCCAAATATGTCTGATGTTGTTGCTTCTCTTTCTAGTGACCGGTTCCTTGACGGAAAACCGACCAACCACTCTTCTTTGGTTGACTCTGAACACAAGGTTTTAGGGAATACTATGTCGACATCTTCTACTTCGACTAATACTAATGCCGCTGCTTCTTTTAGTGAGTCTACTGGTCGTTAG

Network for GWHGAAZE033482

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	7	99	4.50E-12
PF07714.18	PK_Tyr_Ser-Thr	189	273	3.90E-18
PF07714.18	PK_Tyr_Ser-Thr	280	392	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.578
	SRR3591706	second leaf	6.779
	SRR3591707	mature leaf	15.456
	SRR3591708	Shoot apex	2.667
	SRR3591709	Stem	6.603
	SRR3591710	White floral bud	3.672
	SRR3591711	White flower	3.878
	SRR3591712	Green floral bud	1.526
	SRR3591713	Yellow flower	7.298
SRP173429	SRR8316895	Juvenile bud stage	2.237
	SRR8316896	Juvenile bud stage	4.221
	SRR8316897	Juvenile bud stage	2.278
	SRR8316894	Third green stage	1.708
	SRR8316900	Third green stage	1.822
	SRR8316901	Third green stage	1.903
	SRR8316898	Complete white stage	1.025
	SRR8316899	Complete white stage	4.004
	SRR8316903	Complete white stage	1.806
	SRR8316902	Silver flowering stage	2.774
	SRR8316904	Silver flowering stage	4.061
	SRR8316905	Silver flowering stage	2.306
	SRR8316906	Gold flowering stage	13.396
	SRR8316907	Gold flowering stage	5.247
	SRR8316908	Gold flowering stage	17.969
SRP132670	SRR6706286	Control	1.877
	SRR6706287	Light intensity 50%	1.917
	SRR6706288	Light intensity 20%	1.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.351
	CNS0095593	Slightly white alabastrum(diploid) 2	2.182
	CNS0095594	Slightly white alabastrum(diploid) 3	2.937
	CNS0095595	Whole white alabastrum(diploid) 2	0.823
	CNS0095596	Whole white alabastrum(diploid) 3	0.964
	CNS0095597	Whole white alabastrum(diploid) 4	0.515
	CNS0095598	Silvery flower (diploied) 1	1.196
	CNS0095599	Silvery flower (diploied) 2	1.317
	CNS0095600	Silvery flower (diploied) 3	1.564
	CNS0095601	Golden flower (diploid) 1	1.862
	CNS0095602	Golden flower (diploid) 2	1.510
	CNS0095603	Golden flower (diploid) 3	1.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.464
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.346
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.617
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.829
	CNS0095610	Silvery flower (diploied) 1	3.844
	CNS0095611	Silvery flower (diploied) 2	1.554
	CNS0095612	Silvery flower (diploied) 3	1.852
	CNS0095613	Golden flower (tetraploid) 1	1.931
	CNS0095614	Golden flower (tetraploid) 2	3.269
	CNS0095615	Golden flower (tetraploid) 3	0.591
CRA001975	CRR073297	Stem 1	1.040
	CRR073298	Stem 2	0.539
	CRR073299	Stem 3	0.464
	CRR073300	Leaf 1	1.069
	CRR073301	Leaf 2	1.174
	CRR073302	Leaf 3	1.682
	CRR073303	Juvenile bud 1	1.234
	CRR073304	Juvenile bud 2	0.912
	CRR073305	Juvenile bud 3	0.790
	CRR073306	Third green 1	3.890
	CRR073307	Third green 2	4.175
	CRR073308	Third green 3	4.778
	CRR073309	Second white 1	0.779
	CRR073310	Second white 2	1.165
	CRR073311	Second white 3	0.497
	CRR073312	Silver flowering 1	0.964
	CRR073313	Silver flowering 2	0.998
	CRR073314	Silver flowering 3	1.063
	CRR073315	Gold flowering 1	4.117
	CRR073316	Gold flowering 2	6.484
	CRR073317	Gold flowering 3	3.122
	CRR073318	Tawny withering 1	2.872
	CRR073319	Tawny withering 2	3.785
	CRR073320	Tawny withering 3	0.979