Gene detail

Detail information of GWHGAAZE033558

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010252210.1	0	PREDICTED: superkiller viralicidic activity 2-like 2 [Nelumbo nucifera]
COG	YP_007168813.1	1E-115	DSH domain-containing protein
Swissprot	tr\|B9DFG3\|ISE2_ARATH	3E-76	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBL	tr\|F6H9P7\|F6H9P7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48916.1}
TAIR10	AT2G06990.1	0	RNA helicase, ATP-dependent, SK12/DOB1 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	1748327	1762332	-
GWHAAZE00000108	mRNA	1748327	1762332	-
GWHAAZE00000108	exon	1748327	1748437	-
GWHAAZE00000108	exon	1749081	1749173	-
GWHAAZE00000108	exon	1749287	1749382	-
GWHAAZE00000108	exon	1749898	1750046	-
GWHAAZE00000108	exon	1753991	1754144	-
GWHAAZE00000108	exon	1756294	1756389	-
GWHAAZE00000108	exon	1756470	1756559	-
GWHAAZE00000108	exon	1757353	1757511	-
GWHAAZE00000108	exon	1757929	1758141	-
GWHAAZE00000108	exon	1758816	1758932	-
GWHAAZE00000108	exon	1759030	1759101	-
GWHAAZE00000108	exon	1759186	1759353	-
GWHAAZE00000108	exon	1759528	1759596	-
GWHAAZE00000108	exon	1759683	1759787	-
GWHAAZE00000108	exon	1760039	1760353	-
GWHAAZE00000108	exon	1760597	1761669	-
GWHAAZE00000108	exon	1762300	1762332	-
GWHAAZE00000108	five_prime_UTR	1762300	1762332	-
GWHAAZE00000108	five_prime_UTR	1761584	1761669	-
GWHAAZE00000108	CDS	1760597	1761583	-
GWHAAZE00000108	CDS	1760039	1760353	-
GWHAAZE00000108	CDS	1759683	1759787	-
GWHAAZE00000108	CDS	1759528	1759596	-
GWHAAZE00000108	CDS	1759186	1759353	-
GWHAAZE00000108	CDS	1759030	1759101	-
GWHAAZE00000108	CDS	1758816	1758932	-
GWHAAZE00000108	CDS	1757929	1758141	-
GWHAAZE00000108	CDS	1757353	1757511	-
GWHAAZE00000108	CDS	1756470	1756559	-
GWHAAZE00000108	CDS	1756294	1756389	-
GWHAAZE00000108	CDS	1753991	1754144	-
GWHAAZE00000108	CDS	1749898	1750046	-
GWHAAZE00000108	CDS	1749287	1749382	-
GWHAAZE00000108	CDS	1749081	1749173	-
GWHAAZE00000108	CDS	1748327	1748437	-

Transcript Sequence
>GWHTAAZE033597 CACAGTAGCTTCTTCTCCATTATCCAATTTCAGAGTAGAGTGTATCTTAGGCATACACAGTGAAAGTAGTTTGTAAGTGAAACTAGGGGATTGAGGAATTAGGTAACAACTTGGTACCAATGGAGGACTCTCCAACTCTAGGGAAAAGGAAGCAACCAGAAGAAAGTTCGGAGGTTACAGAAACAGATGCCCCAAAGCAAGAAGAATCTGCCTCGAAGCGGCCTAATCTGGCACGGACATGCGTGCACGAGGTTGCTGTCCCGAGTGGGTACACTTGTAGCAAGGATGAGTCTATTCACGGAACACTATCGGATCCTGTGTATAACGGTGAGATGGCAAAAACCTATCCGTTTAACCTCGACCCGTTCCAGCAGGTTTCAGTTGCGTGCTTGGAAAGGAATGAGTCAGTTCTGGTCTCGGCACATACATCTGCTGGTAAAACCGCAGTTGCCGAGTATGCAATTGCGATGGCTTTTAGAGACAAGCAAAGGGTCATATATACATCTCCATTGAAAGCTTTGAGCAATCAGAAGTACAGAGAATTGAGCCAGGAGTTTTCTGATGTTGGGTTGATGACGGGTGATGTTACACTGTCGCCGAATGCCAGTTGTTTGGTGATGACAACTGAAATTCTAAGGGGAATGCTTTACAGGGGTTCAGAGGTATTGAAAGAAGTTGCATGGGTTATATTTGATGAAATACATTACATGAAGGACCGCGAGAGAGGGGTGGTTTGGGAAGAGAGTATTATATTCTTGCCCCCAGCTATAAAGATGGTTTTTCTATCTGCAACGATGTCGAATGCAACTGAGTTTGCCGAATGGATATGTAATATACATAAACAGCCATGTCATGTGGTTTACACTGATTTTCGTCCAACGCCTCTTCAGCATTATGTTTTCCCTATAGGTGGGTCGGGGTTGTATCTTGTAGTTGACGAGAATGAGCAGTTTAGGGAGGACAATTTCATGAAACTGCAGGATACTTTTACAAAACAGAAGCAGCAGGCTGGTGGGAACAAGAGTGGAAATGCAAAAGCGAGCGGTAGAATTGCAAAAGGTGGTAATGCTTCTGGTGGTGGTTCTGATATATACAAAATCGTCAAGATGATTATGGAACGGAAATTTCAGCCGGTTATAATTTTCAGCTTTAGTAGAAGAGAATGTGAGCAACATGCAATGTCAATGTCCAAACTTGATTTTAATACCCAAGATGAGAAGGATGTAGTGGAGCAGGTTTTCAAAAACGCGATACAATGCTTGAGTGAGGAGGATAGAAACTTGCCTGCAATTGAGCTGATGTTGCCGCTGCTCCAGCGAGGCATTGCTGTTCATCATTCTGGCCTCCTTCCTATTATCAAAGAATTGGTAGAACTTCTCTTCCAAGAAGGTCTTGTAAAGGCTCTATTTGCCACAGAAACGTTTGCCATGGGGTTGAACATGCCTGCAAAAACTGTCGTTTTCACCAGCGTTAAAAAATGGGATGGTGATAGTCATCGTTACATTGGATCTGGTGAGTATATCCAGATGAGTGGAAGAGCTGGGCGTCGTGGCAAGGATGAGCGTGGTATATGTATTATAATGATTGATGAACAGATGGAGATGAACACCATAAAGGACATGGTTCTGGGTAAACCTGCACCATTGGTCAGTACTTTCAGGCTGAGCTACTACTCAATTTTGAACTTAATGAGTCGTGCGGAGGGCCAATTTACTGCTGAGCATGTTATCAGGAATTCATTCCACCAATTTCAGTATGAGAAGGCCTTACCTGATATAGGGAAAAAAGTTTCAAAGCTAGAAGAGGAAGCTGCCATGCTTGATGCCTCGGGAGAGGCTGAAGTTGCTGAATATCATAAGCTAAAGCTTGAGATTGCCCAAATAGAGAAGAAGATGATGGCAGAAATGACAAGGCCTGAAAGGGTTCTTTATTTCCTTCTACCTGGAAGGCTGGTTAAGGTACGGGAAGGTGGAACGGATTGGGGCTGGGGAGTAGTTGTCAATGTGGTAAAAAGGCCCTCGGCAGCATTGGGCAGTTTGCCCCCGGCATTGTCTTCTTCACGTGGTGGTAGTAGCTATATTGTGGATACCTTGCTTCATTGTTCTCTTGGTTCAAGTGAAAATGGTTCTCGGCCGAAACCATGTCCACCCGTCCTGGAGAGAAGGGTACCTGTTCAGTTGCCCCTTCTATCTGCGCTGAGCAAGCTCAGAATATCTATTCCTTCTGATCTCCGGCCTATCGAAGCGAGGCAAAGTATACTTCTTGCAGTACAGGAACTTGGCAAACGTTTTCCTCAAGGCCTCCCAAAGCTTAATCCTGTGAAGGACATGGGCATTGAGGATCCCGAGTTTGTCGAGTTGGTCTGTCAGATTGAGAAACTCGAGCAGAATTTGTTTTCTCATCCACTGCACAAGCAGTGTCAAGATGAACATCAGATTAAATGTTTCCAGAGGAAAGCAGAGGTCAATCATGAAATTCAACAGCTCAAGTCAAAAATGCGGGAGTCCCAGCTACAAAAGTTCCGTGATGAACTTAGGAACCGTTCTAGGGTTTTGAAAAAGCTTGGCCATATTGATGCTGATGGTGTTGTCCAGTTAAAGGGACGGGCAGCCTGTTTGATAGACACTGGAGATGAGCTTCTTGTCACTGAATTGATGTTCAATGGTACATTCAATGATGTTGATCATCATCAAATAGCTGCACTGGCAAGTTGCTTTATTCCAGGAGACAGATCGAGCGAGCAAATTCATTTAAGAGCAGAACTTGCTAAACCATTGCAACAGCTCCAAGACAGTGCTAGAAGAATAGCTGAGATACAACACGAGTGCAAATTGGAAGTAAATGTGGATGAGTATGTGGAGGCTGCTGTTAGACCATACTTGATGGATGTTATCTATTGTTGGTCAAAGGGGGCAACTTTTGCGGAAGTTATACAAATGACTGATATCTTTGAAGGGAGCATTATACGGCTGGCTAGAAGGCTTGATGAGTTCATGAACCAGTTACGTGCTGCTGCACATGCGGTGGGAGAAGCAGGTTTGGAAAGCAAGTTTGCAGCGGCTAGTGAAAGCCTTCGCCGTGGAATTATGTTTGCCAATTCCCTTTATCTGTAA

Network for GWHGAAZE033558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	82	228	1.10E-17
PF00271.32	Helicase_C	391	478	1.30E-06
PF13234.7	rRNA_proc-arch	534	794	5.60E-67
PF08148.13	DSHCT	822	991	9.00E-45

Protein Sequence

>GWHPAAZE033579
MEDSPTLGKRKQPEESSEVTETDAPKQEESASKRPNLARTCVHEVAVPSGYTCSKDESIHGTLSDPVYNGEMAKTYPFNLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFREDNFMKLQDTFTKQKQQAGGNKSGNAKASGRIAKGGNASGGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQDEKDVVEQVFKNAIQCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTIKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQYEKALPDIGKKVSKLEEEAAMLDASGEAEVAEYHKLKLEIAQIEKKMMAEMTRPERVLYFLLPGRLVKVREGGTDWGWGVVVNVVKRPSAALGSLPPALSSSRGGSSYIVDTLLHCSLGSSENGSRPKPCPPVLERRVPVQLPLLSALSKLRISIPSDLRPIEARQSILLAVQELGKRFPQGLPKLNPVKDMGIEDPEFVELVCQIEKLEQNLFSHPLHKQCQDEHQIKCFQRKAEVNHEIQQLKSKMRESQLQKFRDELRNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDVDHHQIAALASCFIPGDRSSEQIHLRAELAKPLQQLQDSARRIAEIQHECKLEVNVDEYVEAAVRPYLMDVIYCWSKGATFAEVIQMTDIFEGSIIRLARRLDEFMNQLRAAAHAVGEAGLESKFAAASESLRRGIMFANSLYL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12598	MTR4, SKIV2L2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006401	biological_process	RNA catabolic process
GO:0003723	molecular_function	RNA binding
GO:0003724	molecular_function	RNA helicase activity
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.135
	SRR3591706	second leaf	16.270
	SRR3591707	mature leaf	11.413
	SRR3591708	Shoot apex	26.927
	SRR3591709	Stem	17.848
	SRR3591710	White floral bud	13.801
	SRR3591711	White flower	14.817
	SRR3591712	Green floral bud	19.363
	SRR3591713	Yellow flower	12.151
SRP173429	SRR8316895	Juvenile bud stage	15.306
	SRR8316896	Juvenile bud stage	21.527
	SRR8316897	Juvenile bud stage	9.263
	SRR8316894	Third green stage	9.790
	SRR8316900	Third green stage	22.294
	SRR8316901	Third green stage	22.428
	SRR8316898	Complete white stage	4.893
	SRR8316899	Complete white stage	24.243
	SRR8316903	Complete white stage	13.708
	SRR8316902	Silver flowering stage	6.243
	SRR8316904	Silver flowering stage	10.164
	SRR8316905	Silver flowering stage	5.193
	SRR8316906	Gold flowering stage	14.860
	SRR8316907	Gold flowering stage	16.866
	SRR8316908	Gold flowering stage	17.609
SRP132670	SRR6706286	Control	24.591
	SRR6706287	Light intensity 50%	24.019
	SRR6706288	Light intensity 20%	25.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.317
	CNS0095593	Slightly white alabastrum(diploid) 2	15.714
	CNS0095594	Slightly white alabastrum(diploid) 3	13.077
	CNS0095595	Whole white alabastrum(diploid) 2	14.243
	CNS0095596	Whole white alabastrum(diploid) 3	13.717
	CNS0095597	Whole white alabastrum(diploid) 4	13.966
	CNS0095598	Silvery flower (diploied) 1	16.845
	CNS0095599	Silvery flower (diploied) 2	15.417
	CNS0095600	Silvery flower (diploied) 3	17.370
	CNS0095601	Golden flower (diploid) 1	16.038
	CNS0095602	Golden flower (diploid) 2	20.181
	CNS0095603	Golden flower (diploid) 3	18.580
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.296
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.434
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.170
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.971
	CNS0095610	Silvery flower (diploied) 1	13.737
	CNS0095611	Silvery flower (diploied) 2	17.045
	CNS0095612	Silvery flower (diploied) 3	13.349
	CNS0095613	Golden flower (tetraploid) 1	9.109
	CNS0095614	Golden flower (tetraploid) 2	14.395
	CNS0095615	Golden flower (tetraploid) 3	12.904
CRA001975	CRR073297	Stem 1	23.524
	CRR073298	Stem 2	24.218
	CRR073299	Stem 3	22.049
	CRR073300	Leaf 1	28.885
	CRR073301	Leaf 2	23.985
	CRR073302	Leaf 3	18.073
	CRR073303	Juvenile bud 1	19.789
	CRR073304	Juvenile bud 2	14.090
	CRR073305	Juvenile bud 3	25.932
	CRR073306	Third green 1	7.088
	CRR073307	Third green 2	5.785
	CRR073308	Third green 3	8.058
	CRR073309	Second white 1	6.725
	CRR073310	Second white 2	8.597
	CRR073311	Second white 3	7.729
	CRR073312	Silver flowering 1	8.714
	CRR073313	Silver flowering 2	9.713
	CRR073314	Silver flowering 3	9.169
	CRR073315	Gold flowering 1	8.439
	CRR073316	Gold flowering 2	14.594
	CRR073317	Gold flowering 3	7.584
	CRR073318	Tawny withering 1	14.718
	CRR073319	Tawny withering 2	13.062
	CRR073320	Tawny withering 3	15.989