Detail information of GWHGAAZE033639


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31216.10RNA polymerase alpha subunit protein (chloroplast) [Lonicera japonica]
COGYP_007126701.17E-48DNA-directed RNA polymerase subunit alpha
Swissprottr|Q68RX5|RPOA_PANGI0DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}
trEMBLtr|D3WBT4|D3WBT4_LONJA0RNA polymerase alpha subunit protein {ECO:0000313|EMBL:ADD31216.1}
TAIR10ATCG00740.13E-126RNA polymerase subunit alpha

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000106gene70347828-
GWHAAZE00000106mRNA70347828-
GWHAAZE00000106exon70347828-
GWHAAZE00000106CDS70347828-
Transcript Sequence

Network for GWHGAAZE033639

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0053map03020 RNA polymerase
GO:0003899 DNA-directed 5'-3' RNA polymerase activity GOslim:molecular_function
GO:0006351 transcription, DNA-templated GOslim:biological_process
GO:0046983 protein dimerization activity GOslim:molecular_function
CFinderModule0205GO:0006412 translation GOslim:biological_process
map03010 Ribosome
GO:0015935 small ribosomal subunit GOslim:cellular_component
GO:0003735 structural constituent of ribosome GOslim:molecular_function
GO:0015934 large ribosomal subunit GOslim:cellular_component
GO:0019843 rRNA binding GOslim:molecular_function
map03010 Ribosome
GO:0003723 RNA binding GOslim:molecular_function
map03020 RNA polymerase
GO:0006351 transcription, DNA-templated GOslim:biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01193.25RNA_pol_L352253.50E-12
PF01000.27RNA_pol_A_bac661571.10E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03040rpoA RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0046983molecular_functionprotein dimerization activity
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.770
SRR3591706second leaf0.556
SRR3591707mature leaf1.183
SRR3591708Shoot apex0.938
SRR3591709Stem0.373
SRR3591710White floral bud0.344
SRR3591711White flower0.300
SRR3591712Green floral bud0.450
SRR3591713Yellow flower0.496
SRP173429 SRR8316895Juvenile bud stage 5.250
SRR8316896Juvenile bud stage 2.754
SRR8316897Juvenile bud stage 7.956
SRR8316894Third green stage 8.481
SRR8316900Third green stage 1.603
SRR8316901Third green stage 0.747
SRR8316898Complete white stage 1.438
SRR8316899Complete white stage 0.750
SRR8316903Complete white stage 1.427
SRR8316902Silver flowering stage2.854
SRR8316904Silver flowering stage3.211
SRR8316905Silver flowering stage3.137
SRR8316906Gold flowering stage 0.886
SRR8316907Gold flowering stage 0.583
SRR8316908Gold flowering stage 0.636
SRP132670SRR6706286Control0.367
SRR6706287Light intensity 50%0.364
SRR6706288Light intensity 20%0.534
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.397
CNS0095593Slightly white alabastrum(diploid) 23.436
CNS0095594Slightly white alabastrum(diploid) 33.819
CNS0095595Whole white alabastrum(diploid) 25.783
CNS0095596Whole white alabastrum(diploid) 33.884
CNS0095597Whole white alabastrum(diploid) 46.860
CNS0095598Silvery flower (diploied) 14.209
CNS0095599Silvery flower (diploied) 23.285
CNS0095600Silvery flower (diploied) 32.998
CNS0095601Golden flower (diploid) 14.373
CNS0095602Golden flower (diploid) 22.440
CNS0095603Golden flower (diploid) 32.434
CNS0095604Slightly white alabastrum(tetraploid) 14.043
CNS0095605Slightly white alabastrum(tetraploid) 23.626
CNS0095606Slightly white alabastrum(tetraploid) 32.522
CNS0095607Whole white alabastrum(tetraploid) 13.633
CNS0095608Whole white alabastrum(tetraploid) 26.833
CNS0095609Whole white alabastrum(tetraploid) 32.185
CNS0095610Silvery flower (diploied) 12.494
CNS0095611Silvery flower (diploied) 23.387
CNS0095612Silvery flower (diploied) 32.441
CNS0095613Golden flower (tetraploid) 12.463
CNS0095614Golden flower (tetraploid) 22.171
CNS0095615Golden flower (tetraploid) 33.068
CRA001975CRR073297Stem 12.392
CRR073298Stem 24.301
CRR073299Stem 31.497
CRR073300Leaf 11.895
CRR073301Leaf 22.505
CRR073302Leaf 31.562
CRR073303Juvenile bud 11.598
CRR073304Juvenile bud 21.278
CRR073305Juvenile bud 32.177
CRR073306Third green 11.388
CRR073307Third green 20.774
CRR073308Third green 31.731
CRR073309Second white 11.023
CRR073310Second white 24.413
CRR073311Second white 36.202
CRR073312Silver flowering 13.420
CRR073313Silver flowering 20.313
CRR073314Silver flowering 32.048
CRR073315Gold flowering 13.831
CRR073316Gold flowering 25.675
CRR073317Gold flowering 33.270
CRR073318Tawny withering 11.450
CRR073319Tawny withering 21.368
CRR073320Tawny withering 31.442