Gene detail

Detail information of GWHGAAZE033814

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU42219.1	7.62224E-97	hypothetical protein MIMGU_mgv1a010004mg [Erythranthe guttata]
COG	YP_010476.1	0.000000003	RNA-binding protein
Swissprot	tr\|O22315\|SR34_ARATH	2E-84	Serine/arginine-rich-splicing factor SR34
trEMBL	tr\|B8LQY2\|B8LQY2_PICSI	6E-98	Putative uncharacterized protein {ECO:0000313\|EMBL:ABR18062.1}
TAIR10	AT1G02840.3	9E-60	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000140	gene	39791	42534	+
GWHAAZE00000140	mRNA	39791	42534	+
GWHAAZE00000140	exon	39791	39901	+
GWHAAZE00000140	exon	40365	40430	+
GWHAAZE00000140	exon	40515	40589	+
GWHAAZE00000140	exon	40680	40794	+
GWHAAZE00000140	exon	40896	40942	+
GWHAAZE00000140	exon	41077	41152	+
GWHAAZE00000140	exon	41683	41732	+
GWHAAZE00000140	exon	41826	41882	+
GWHAAZE00000140	exon	42150	42256	+
GWHAAZE00000140	exon	42372	42534	+
GWHAAZE00000140	CDS	39791	39901	+
GWHAAZE00000140	CDS	40365	40430	+
GWHAAZE00000140	CDS	40515	40589	+
GWHAAZE00000140	CDS	40680	40794	+
GWHAAZE00000140	CDS	40896	40942	+
GWHAAZE00000140	CDS	41077	41152	+
GWHAAZE00000140	CDS	41683	41732	+
GWHAAZE00000140	CDS	41826	41882	+
GWHAAZE00000140	CDS	42150	42256	+
GWHAAZE00000140	CDS	42372	42534	+

Transcript Sequence
>GWHTAAZE033854 TTCTATTTTTTAATTGTCTCAGAAACAATGAGTCGATCGAGTAGAACCCTCTATGTGGGCAATCTTCCAGGTGATATTCGTGAACGGGAAGTTAAAGATCTGTTTCGCAAGTATGGACCAATAGTACATATTGATTTGAAAATCCCGCCTAGACCCCCTGGTTATGCATTTGTTGAGTTTGATGAAGCTCGAGATGCTGAAGATGCTATTCGTGGACGTGATGGCTATGATTTTGATGGGAATCGCTTACGGGTGGAGCTTGCACATGGTGGACGTGGTAACTCGTCATCAAGGGATCGGTATAGCAGTCATAGCAGCAGTGGTCGAGGTGGCCGTGGTGGGATTTCTAGGCGTTCTGATTACCGCGTGTTAGTGACTGGATTGCCCTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATCGTCCGAGCAGGGATGTCTGTTTCTCTCAAGTTTTCCGTGAGGGGTGGTAAGATAGAAAACTTTAGAGGCACAACAGGGATTGTAGATTATACAAACTATGATGACATGAAGTACGCTATCAGGAAACTGGATGACTCAGAGTTTCGGAATTCCTTTTCTCGAGGAGTAATTCGGGTGAAGGAATATGATTCAAGCCGTTCTAGGAGTCACAGCTACTCATTAGGCAGTCGCAGTCGCAGTCGCAGCCGCAGCCGAAGTTACAGTCGGAGCAGGAGCAGGAGCAAGTCCCCGAAAGCCAAATCTTCTCGTCATTCTAAATCTCATTCAAGGTCTGTCTCTTCCCATTCCCGTTCCAGTTCCCGCTCTGGATCAAAACCACGCCCTGTGTCAAGGTATATATATATTTTTTTCTTTCTATGCAATTGGTTGGGTTCGGATTTTTAG

Network for GWHGAAZE033814

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0245	map03022 Basal transcription factors GO:0005685 U1 snRNP GOslim:cellular_component GO:0005669 transcription factor TFIID complex GOslim:cellular_component GO:0006376 mRNA splice site selection GOslim:biological_process GO:0006352 DNA-templated transcription, initiation GOslim:biological_process GO:0003676 nucleic acid binding GOslim:molecular_function GO:0003729 mRNA binding GOslim:molecular_function map03040 Spliceosome map04657 IL-17 signaling pathway

Module ID

Function Annotation

CFinderModule0245

map03022 Basal transcription factors
GO:0005685 U1 snRNP GOslim:cellular_component
GO:0005669 transcription factor TFIID complex GOslim:cellular_component
GO:0006376 mRNA splice site selection GOslim:biological_process
GO:0006352 DNA-templated transcription, initiation GOslim:biological_process
GO:0003676 nucleic acid binding GOslim:molecular_function
GO:0003729 mRNA binding GOslim:molecular_function
map03040 Spliceosome
map04657 IL-17 signaling pathway

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	17	84	4.10E-19
PF00076.23	RRM_1	123	192	1.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12890	SFRS1, ASF, SF2	Spliceosome	map03040
K12890	SFRS1, ASF, SF2	IL-17 signaling pathway	map04657

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.641
	SRR3591706	second leaf	13.366
	SRR3591707	mature leaf	7.820
	SRR3591708	Shoot apex	26.795
	SRR3591709	Stem	14.253
	SRR3591710	White floral bud	13.958
	SRR3591711	White flower	15.847
	SRR3591712	Green floral bud	14.153
	SRR3591713	Yellow flower	10.430
SRP173429	SRR8316895	Juvenile bud stage	25.376
	SRR8316896	Juvenile bud stage	35.327
	SRR8316897	Juvenile bud stage	22.991
	SRR8316894	Third green stage	14.926
	SRR8316900	Third green stage	33.151
	SRR8316901	Third green stage	33.169
	SRR8316898	Complete white stage	11.825
	SRR8316899	Complete white stage	38.279
	SRR8316903	Complete white stage	23.619
	SRR8316902	Silver flowering stage	12.865
	SRR8316904	Silver flowering stage	14.925
	SRR8316905	Silver flowering stage	7.493
	SRR8316906	Gold flowering stage	21.969
	SRR8316907	Gold flowering stage	33.118
	SRR8316908	Gold flowering stage	30.689
SRP132670	SRR6706286	Control	37.746
	SRR6706287	Light intensity 50%	44.091
	SRR6706288	Light intensity 20%	43.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.218
	CNS0095593	Slightly white alabastrum(diploid) 2	34.301
	CNS0095594	Slightly white alabastrum(diploid) 3	25.721
	CNS0095595	Whole white alabastrum(diploid) 2	27.866
	CNS0095596	Whole white alabastrum(diploid) 3	25.480
	CNS0095597	Whole white alabastrum(diploid) 4	21.504
	CNS0095598	Silvery flower (diploied) 1	34.354
	CNS0095599	Silvery flower (diploied) 2	24.011
	CNS0095600	Silvery flower (diploied) 3	13.501
	CNS0095601	Golden flower (diploid) 1	27.936
	CNS0095602	Golden flower (diploid) 2	18.117
	CNS0095603	Golden flower (diploid) 3	15.669
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.941
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.909
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.671
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.985
	CNS0095610	Silvery flower (diploied) 1	19.341
	CNS0095611	Silvery flower (diploied) 2	12.539
	CNS0095612	Silvery flower (diploied) 3	17.158
	CNS0095613	Golden flower (tetraploid) 1	12.647
	CNS0095614	Golden flower (tetraploid) 2	15.101
	CNS0095615	Golden flower (tetraploid) 3	10.452
CRA001975	CRR073297	Stem 1	40.294
	CRR073298	Stem 2	29.186
	CRR073299	Stem 3	21.712
	CRR073300	Leaf 1	37.292
	CRR073301	Leaf 2	35.523
	CRR073302	Leaf 3	23.303
	CRR073303	Juvenile bud 1	19.248
	CRR073304	Juvenile bud 2	13.787
	CRR073305	Juvenile bud 3	21.988
	CRR073306	Third green 1	2.204
	CRR073307	Third green 2	3.058
	CRR073308	Third green 3	4.602
	CRR073309	Second white 1	3.793
	CRR073310	Second white 2	4.987
	CRR073311	Second white 3	2.912
	CRR073312	Silver flowering 1	2.589
	CRR073313	Silver flowering 2	3.935
	CRR073314	Silver flowering 3	1.731
	CRR073315	Gold flowering 1	7.127
	CRR073316	Gold flowering 2	13.128
	CRR073317	Gold flowering 3	7.162
	CRR073318	Tawny withering 1	19.636
	CRR073319	Tawny withering 2	12.381
	CRR073320	Tawny withering 3	20.788