Gene detail

Detail information of GWHGAAZE033915

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276824.2	0	PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera]
COG	YP_001191689.1	0.00000001	peptidase M24
Swissprot	tr\|O82491\|SPT16_ARATH	0	FACT complex subunit SPT16
trEMBL	tr\|F6I4V8\|F6I4V8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61945.1}
TAIR10	AT4G10710.1	0	global transcription factor C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	829613	832819	+
GWHAAZE00000145	mRNA	829613	832819	+
GWHAAZE00000145	exon	829613	829631	+
GWHAAZE00000145	exon	829769	830764	+
GWHAAZE00000145	exon	830901	831642	+
GWHAAZE00000145	exon	831745	832383	+
GWHAAZE00000145	exon	832576	832819	+
GWHAAZE00000145	CDS	829613	829631	+
GWHAAZE00000145	CDS	829769	830764	+
GWHAAZE00000145	CDS	830901	831642	+
GWHAAZE00000145	CDS	831745	832383	+
GWHAAZE00000145	CDS	832576	832819	+

Transcript Sequence
>GWHTAAZE033955 ATGGCGTCACAACAGAATGATGTTCTTGCAATAGCTACCCCTCCTGCTTCAGAGGATTTACGGTACCTGAAGTCCTCAGCTCTGAACATTTGGTTGCTTGGCTACGAGTTCCCAGAGACGATAATGGTTTTCACAAACAAGCAGATCCATTTCTTGTGTAGCCAGAAGAAGGCATCATTGCTGGAGGTTGTGAAAAAGTCTGCTAAAGATGCTGTCGGTCTAGATGTTGTAATACATATAAAAGGAAAAAATAATGAAGGGACTTCTCAAATGGATGCTATTCTTAGTGTAGTCTGTGCTCAATCAAAGTCAGATGGCCGCAATGGCGCTGTTCTTGGATACTTAGCTAGAGAGGCTCCGGAGGGGAATCTTTTGAAGTCATGGACCTCTAAACTAAAGATGTTAAGCCTCCAGCCTGTGGATATAACCAGTGGGCTGTCCGATCTTTTTGCTGTTAAGGAAGAAGGGGAGCTCATGAATGTTAAGAAGTCTGCGTATTTGATTGCCTCCGCAGTGAAGTTCTTTGTTGTTCCAACACTTGAGAGTGTCATTGATGAAGAAAAGAAAGTAACCCATTCTTCGTTAATGGACGATACAGAGAAGGCTATTCTGGAACCTGCCAGATTTAAGTTGAAGCTGAAGGCTGACAATGTAGATATCTGTTACCCTCCTATATTTCAAAGTGGTGGGAAGTTTGATCTCAGGCCTAATGCTTCTAGCAACGATGAGTATCTTTACTATGATCATGCCAGTGTAATCATATGTGCTATTGGATCCCGATATAGCAGCTATTGTTCGAATATTGCGAGGACTTACCTGATCAATCCCAATGAAATGCAGAATAAGGTGTATGATGTTCTTCTCAAGGCCCATGAAGCCGCCATTATTGCAGTGCAGCCTGGTAGCAAGGCTAGTGCCGTTTATCGAGCAGCCGTTAACGTCGTTGAGAGGGATGCTCCTGAATTGATTGCCAACTTTACCAAGTCCGCTGGGACCGGCATTGGTCTCGAGTTCCATACTGTTATTGTAACCGAACGTGGACGCGAGGTGGTGACTGGATTGAGCTCTAGAGCCGTTAAGGACGTGGTCTATACTTTCAAAGTTGACGAGGAAGAGCGGCCAAAGCCAAAAATGGTGCCCGATTATAACAGTGGGTCCCTTCATTCCAAGGCAACATTGAGATCAAAAAACCAGGAGATGTCAAAGGAAGAACTCCGTAGACAGCACCAGGCCGAACTTGCCCACCTGAGGTTCGAAGAAACCGCTCGACGACTCACTGGTGAAGGGACCGGAACCGAATCCAATCGGATTTCTACAAAGACTTCAAGTGATCTAATTGCCTATAAGAGCATCAACGATCTACCACCTCCTCAAGATATGACGATTCAAGTTGACCAGAAGAATGAGGCCATCCTTGTCCCTATATATGGAACCATGGTTCCTTTTCATGTTGCAACTGTGAAGAATGTCTCAGGCCAGCAAGATACTAATCGAACTTGCTATATAAGAATAATCTTTAATGTTCCTAGCACTCCTTTTACTCCTCAGGATGCAAAGTCCTTGAAGAATCAGGGAGCTATTTTCTTGAAGGAGCTTTCCTTTTGTTCAAAGGACCTGAGGCACATCAGCGAAATGGTGCGGCTCATTAAAATGCTTCGAAAGAATGTTGTTTCGAGGGAGCCTGAAAGAGCCGAAAGGGCCACATTGGTCACCCAAGAGAAACTTGTACTTGCAGGGAACAAATTCAAGCCAATGAGGCCAGATGAGCGTGTCGACATTATGTATGTCAACATAAAACACGCGTTACTTCAACCCGCTGAGAAGGAAATGATCACTCTCTTGCACTTCCATCTTCACAACCACATAATGGTCGGAAACAAGAAAACGAAAGATGTCCAATTCTACATCGAGGTGATGGATGCGGTCCAAACCCTAGGTGGTGCAAAAAGATCTGCGTATGACCCAGATGAGATTGAAGAAGAACAAAGGGAGAGGGAGCGAAAGAACAAGATCAACAAGGGCTTTGACAATTTTATGAGCCGGGTTTACGATCTTCGGGGACAGCCACAATTTGAGGACCTTAAACTCGAGTTTGATCAGCCCTTTAGAGAACTCGGATTCCATGGGGTACCCTACAAAGCTTCGGCTTTCGTCGTACCTTCTACCAGCTGCTTAGTCGAGCTCATTGAGACCCCTTTCCTCGTAGTCACTTTGAGCGAAGTGGAGATTGTCAACTTTGAGAGAGTCGGTCTAGGTCAGAAGAACTCCGACATGGCTATCGTATTCAAAGACTTCAAACGAGACGTTCTTCGTATAGACTCTATCCCTTCCTCGTCTCTTGAGGGGATCAAGAAATGGCTTGATGAGGCAGCCAACATCACGTATTACGAGAGCAGCGAATCACTGGTGGAGTCTGATGAGGACGAGGAAGATAACGAAGATGAAGATTCTGAGGAAGAGGAAGAGGAAGGTAAGACATGGGATGAGTTGGAGAAGGAAGCAAGCTATACTGACAAAGAGAGAGGGAATGAGTACGACAGTGAGGAGGAGAAGAAGAGAAGGAAGGCAAAAGCCTTTGGGAAGGCTCGTGGTGGTACTGGTCAGAGTAGCAGCAGGTACAAGAGAGCAAAGCTGAGGTAA

Network for GWHGAAZE033915

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0275	map03040 Spliceosome

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14826.7	FACT-Spt16_Nlob	5	144	3.20E-35
PF00557.25	Peptidase_M24	195	341	1.50E-22
PF08644.12	SPT16	462	584	2.00E-36
PF08512.13	Rtt106	713	790	8.60E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.159
	SRR3591706	second leaf	0.031
	SRR3591707	mature leaf	0.062
	SRR3591708	Shoot apex	0.248
	SRR3591709	Stem	0.031
	SRR3591710	White floral bud	0.225
	SRR3591711	White flower	0.599
	SRR3591712	Green floral bud	0.330
	SRR3591713	Yellow flower	0.389
SRP173429	SRR8316895	Juvenile bud stage	1.392
	SRR8316896	Juvenile bud stage	1.462
	SRR8316897	Juvenile bud stage	1.195
	SRR8316894	Third green stage	1.009
	SRR8316900	Third green stage	1.965
	SRR8316901	Third green stage	1.609
	SRR8316898	Complete white stage	0.250
	SRR8316899	Complete white stage	1.787
	SRR8316903	Complete white stage	0.323
	SRR8316902	Silver flowering stage	0.229
	SRR8316904	Silver flowering stage	0.361
	SRR8316905	Silver flowering stage	0.147
	SRR8316906	Gold flowering stage	0.396
	SRR8316907	Gold flowering stage	0.432
	SRR8316908	Gold flowering stage	0.391
SRP132670	SRR6706286	Control	1.852
	SRR6706287	Light intensity 50%	1.934
	SRR6706288	Light intensity 20%	1.973
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.398
	CNS0095593	Slightly white alabastrum(diploid) 2	1.521
	CNS0095594	Slightly white alabastrum(diploid) 3	1.365
	CNS0095595	Whole white alabastrum(diploid) 2	1.118
	CNS0095596	Whole white alabastrum(diploid) 3	1.061
	CNS0095597	Whole white alabastrum(diploid) 4	0.650
	CNS0095598	Silvery flower (diploied) 1	1.215
	CNS0095599	Silvery flower (diploied) 2	0.923
	CNS0095600	Silvery flower (diploied) 3	0.510
	CNS0095601	Golden flower (diploid) 1	1.442
	CNS0095602	Golden flower (diploid) 2	0.701
	CNS0095603	Golden flower (diploid) 3	0.938
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.086
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.017
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.001
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.071
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	3.344
	CRR073298	Stem 2	2.688
	CRR073299	Stem 3	1.002
	CRR073300	Leaf 1	3.015
	CRR073301	Leaf 2	2.539
	CRR073302	Leaf 3	1.342
	CRR073303	Juvenile bud 1	1.174
	CRR073304	Juvenile bud 2	0.290
	CRR073305	Juvenile bud 3	1.379
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.023
	CRR073308	Third green 3	0.095
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.164
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.130
	CRR073314	Silver flowering 3	0.216
	CRR073315	Gold flowering 1	0.874
	CRR073316	Gold flowering 2	1.256
	CRR073317	Gold flowering 3	0.308
	CRR073318	Tawny withering 1	1.237
	CRR073319	Tawny withering 2	1.310
	CRR073320	Tawny withering 3	1.068