LjaFGD


Comparision between CFinderModule0193 and CFinderModule0245

Protein:Yellow color-overlap protein     Green color--Module1 member     Darkgreen color--Module2 member.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
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1.Module annotation (GSEA enrichment result)

Module IDFunction AnnotationP valueFDR
CFinderModule0193GO:0005509 calcium ion binding GOslim:molecular_function0.032421330.03242133
CFinderModule0245map03022 Basal transcription factors0.0001672040.0024579
CFinderModule0245GO:0005685 U1 snRNP GOslim:cellular_component0.0022660380.003399057
CFinderModule0245GO:0005669 transcription factor TFIID complex GOslim:cellular_component0.0022660380.003399057
CFinderModule0245GO:0006376 mRNA splice site selection GOslim:biological_process0.0016190750.004857226
CFinderModule0245GO:0006352 DNA-templated transcription, initiation GOslim:biological_process0.0071061220.010659183
CFinderModule0245GO:0003676 nucleic acid binding GOslim:molecular_function0.002695890.022158479
CFinderModule0245GO:0003729 mRNA binding GOslim:molecular_function0.0038817770.022158479
CFinderModule0245map03040 Spliceosome0.0030933440.022736082
CFinderModule0245map04657 IL-17 signaling pathway0.0080715740.039550711

2.Module member annotation

Gene IDAnnotation
GWHGAAZE007977-
GWHGAAZE012424AT2G03150.1 ATP/GTP-binding protein family
GWHGAAZE012425AT2G03150.1 ATP/GTP-binding protein family
GWHGAAZE013874AT5G66100.1 winged-helix DNA-binding transcription factor family protein
GWHGAAZE014836AT3G50670.1 U1 small nuclear ribonucleoprotein-70K
GWHGAAZE017280AT1G17440.2 Transcription initiation factor TFIID subunit A
GWHGAAZE017281AT1G17440.2 Transcription initiation factor TFIID subunit A
GWHGAAZE020749AT2G11010.1 hypothetical protein;(source:Araport11)
GWHGAAZE020750AT2G17525.1 Pentatricopeptide repeat (PPR) superfamily protein
GWHGAAZE026413AT5G51410.3 LUC7 N_terminus domain-containing protein
GWHGAAZE029696AT1G15200.1 protein-protein interaction regulator family protein
GWHGAAZE031155AT3G21215.1 RNA-binding (RRM/RBD/RNP motifs) family protein
GWHGAAZE032113AT1G56110.1 homolog of nucleolar protein NOP56
GWHGAAZE033186AT1G03360.1 ribosomal RNA processing 4
GWHGAAZE033814AT1G02840.3 RNA-binding (RRM/RBD/RNP motifs) family protein