LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE003783

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE003783

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE003783AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 41positive
GWHGAAZE023883AT1G75290.1NAD(P)-binding Rossmann-fold superfamily protein0.98positive
GWHGAAZE004141AT1G30760.1FAD-binding Berberine family protein0.96positive
GWHGAAZE001434AT4G38180.1FAR1-related sequence 50.95positive
GWHGAAZE003784AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 40.95positive
GWHGAAZE001435AT1G59830.1protein phosphatase 2A-20.95positive
GWHGAAZE020402AT3G13050.1Major facilitator superfamily protein0.94positive
GWHGAAZE028154AT3G29100.1vesicle transport V-snare 130.94positive
GWHGAAZE009254AT4G18490.2hypothetical protein;(source:Araport11)0.93positive
GWHGAAZE020911AT5G20480.1EF-TU receptor0.93positive
GWHGAAZE020713AT4G27220.1NB-ARC domain-containing disease resistance protein0.93positive
GWHGAAZE004755AT4G21390.1S-locus lectin protein kinase family protein0.93positive
GWHGAAZE026169AT4G29090.1Ribonuclease H-like superfamily protein0.92positive
GWHGAAZE020158AT1G24460.1Encodes a novel protein that co-immunoprecipitates with SYP41. It is involved in vacuolar trafficking and salt tolerance, potentially via a role in vesicle fusion and in maintaining TGN structure or identity. Mutants display delayed formation of the Brefeldin A (BFA) compartment in cotyledons upon application of BFA.0.91positive
GWHGAAZE027275AT5G55110.1Stigma-specific Stig1 family protein0.91positive
GWHGAAZE031484AT5G24090.1chitinase A0.91positive
GWHGAAZE015913AT4G29090.1Ribonuclease H-like superfamily protein0.91positive
GWHGAAZE007481AT1G15380.2Lactoylglutathione lyase / glyoxalase I family protein0.9positive
GWHGAAZE002433AT3G15470.1Transducin/WD40 repeat-like superfamily protein0.9positive
GWHGAAZE029856AT5G10530.1Concanavalin A-like lectin protein kinase family protein0.9positive
GWHGAAZE003782----0.9positive
GWHGAAZE000036AT1G21700.1SWITCH/sucrose nonfermenting 3C0.9positive
GWHGAAZE002143AT5G22770.3alpha-adaptin0.9positive
GWHGAAZE003995AT1G63380.1NAD(P)-binding Rossmann-fold superfamily protein0.88positive
GWHGAAZE030087AT5G17540.1HXXXD-type acyl-transferase family protein0.88positive
GWHGAAZE029863AT5G10530.1Concanavalin A-like lectin protein kinase family protein0.88positive
GWHGAAZE020986AT1G61680.2terpene synthase 140.88positive
GWHGAAZE033490AT2G43870.1Pectin lyase-like superfamily protein0.88positive
GWHGAAZE010646AT5G44700.1Leucine-rich repeat transmembrane protein kinase0.87positive
GWHGAAZE031442AT5G24090.1chitinase A0.87positive
GWHGAAZE005050AT1G52950.1Nucleic acid-binding, OB-fold-like protein0.87positive
GWHGAAZE028204AT5G11430.1SPOC domain / Transcription elongation factor S-II protein0.87positive
GWHGAAZE026022AT2G25540.1cellulose synthase 100.87positive
GWHGAAZE010774AT5G38850.1Disease resistance protein (TIR-NBS-LRR class)0.86positive
GWHGAAZE025871AT1G53920.1GDSL-motif lipase 50.86positive
GWHGAAZE032254AT4G29840.1Pyridoxal-5'-phosphate-dependent enzyme family protein0.86positive
GWHGAAZE025155AT3G42723.1aminoacyl-tRNA ligases;ATP binding;nucleotide binding0.86positive
GWHGAAZE023885AT1G75290.1NAD(P)-binding Rossmann-fold superfamily protein0.86positive
GWHGAAZE007038AT3G25810.1Terpenoid cyclases/Protein prenyltransferases superfamily protein0.86positive
GWHGAAZE028572AT3G02760.1Class II aaRS and biotin synthetases superfamily protein0.86positive
GWHGAAZE032708AT4G29990.1Leucine-rich repeat transmembrane protein kinase protein0.86positive
GWHGAAZE029855AT5G10530.1Concanavalin A-like lectin protein kinase family protein0.86positive


Expression profiling, GSEA and motif analysis