LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE011454

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE011454

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE011454AT1G79460.1Terpenoid cyclases/Protein prenyltransferases superfamily protein1positive
GWHGAAZE031160AT4G31480.2Coatomer, beta subunit1positive
GWHGAAZE013736AT1G27990.1transmembrane protein;(source:Araport11)0.99positive
GWHGAAZE006441AT5G47670.2nuclear factor Y, subunit B60.99positive
GWHGAAZE019253AT2G36690.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.99positive
GWHGAAZE028727AT4G31980.1PPPDE thiol peptidase family protein;(source:Araport11)0.99positive
GWHGAAZE028297AT2G28450.2zinc finger (CCCH-type) family protein0.99positive
GWHGAAZE011455AT1G79460.1Terpenoid cyclases/Protein prenyltransferases superfamily protein0.99positive
GWHGAAZE028732AT2G44930.1Plant protein of unknown function (DUF247)0.99positive
GWHGAAZE007647AT2G17030.1F-box family protein with a domain of unknown function (DUF295)0.99positive
GWHGAAZE002080AT1G31940.1cystic fibrosis transmembrane conductance regulator;(source:Araport11)0.99positive
GWHGAAZE007646AT1G49360.1F-box family protein0.99positive
GWHGAAZE000147AT3G09510.1Ribonuclease H-like superfamily protein0.98positive
GWHGAAZE011007AT3G24255.1RNA-directed DNA polymerase (reverse transcriptase)-related family protein0.98positive
GWHGAAZE024704AT4G16920.1Disease resistance protein (TIR-NBS-LRR class) family0.98positive
GWHGAAZE028222AT1G54270.2eif4a-20.98positive
GWHGAAZE019617AT1G54870.1NAD(P)-binding Rossmann-fold superfamily protein0.98positive
GWHGAAZE000724AT5G12460.1Protein of unknown function (DUF604)0.98positive
GWHGAAZE008600AT3G48320.1cytochrome P450, family 71, subfamily A, polypeptide 210.98positive
GWHGAAZE010632AT2G46770.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.98positive
GWHGAAZE026056AT5G11130.1Exostosin family protein0.98positive
GWHGAAZE009410AT2G07505.1zinc ion binding0.98positive
GWHGAAZE009970----0.98positive
GWHGAAZE019613AT1G54870.1NAD(P)-binding Rossmann-fold superfamily protein0.98positive
GWHGAAZE017142AT1G49920.1MuDR family transposase0.98positive
GWHGAAZE008368AT5G33393.1hypothetical protein;(source:Araport11)0.98positive
GWHGAAZE028660AT3G50120.1Plant protein of unknown function (DUF247)0.98positive
GWHGAAZE008601AT3G48310.1cytochrome P450, family 71, subfamily A, polypeptide 220.98positive
GWHGAAZE019274AT4G26090.1NB-ARC domain-containing disease resistance protein0.98positive
GWHGAAZE000572AT5G05260.1cytochrome p450 79a20.98positive
GWHGAAZE003549AT1G14830.1DYNAMIN-like 1C0.98positive
GWHGAAZE001501AT1G13570.1F-box/RNI-like superfamily protein0.98positive
GWHGAAZE017031AT2G07505.1zinc ion binding0.98positive
GWHGAAZE015985AT5G50700.1hydroxysteroid dehydrogenase 10.98positive
GWHGAAZE004489AT2G02650.1Ribonuclease H-like superfamily protein0.98positive
GWHGAAZE020271AT1G64260.1MuDR family transposase0.98positive
GWHGAAZE020640AT5G47250.1LRR and NB-ARC domains-containing disease resistance protein0.98positive
GWHGAAZE007787AT5G61090.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein0.98positive
GWHGAAZE011196AT2G45040.1Matrixin family protein0.98positive
GWHGAAZE000444AT1G10000.1Ribonuclease H-like superfamily protein0.98positive
GWHGAAZE017177AT5G44870.1Disease resistance protein (TIR-NBS-LRR class) family0.98positive
GWHGAAZE000138AT2G47680.1zinc finger (CCCH type) helicase family protein0.98positive
GWHGAAZE007333AT1G66370.1myb domain protein 1130.98positive
GWHGAAZE033703AT5G62230.1ERECTA-like 10.98positive
GWHGAAZE012847AT2G02650.1Ribonuclease H-like superfamily protein0.98positive
GWHGAAZE020765AT4G16960.1Disease resistance protein (TIR-NBS-LRR class) family0.98positive
GWHGAAZE031540AT2G46770.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.98positive
GWHGAAZE016070AT5G09220.1amino acid permease 20.98positive
GWHGAAZE020958AT1G09240.1nicotianamine synthase 30.98positive
GWHGAAZE001959AT2G34930.1disease resistance family protein / LRR family protein0.98positive
GWHGAAZE010634AT2G46770.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.98positive
GWHGAAZE033826AT1G20680.2Protein of unknown function (DUF833)0.97positive
GWHGAAZE010614AT1G64260.1MuDR family transposase0.97positive
GWHGAAZE032159AT1G30890.2Integral membrane HRF1 family protein0.97positive
GWHGAAZE026848AT4G28390.1ADP/ATP carrier 30.97positive
GWHGAAZE021973AT5G44400.1FAD-binding Berberine family protein0.97positive
GWHGAAZE020563AT1G49920.1MuDR family transposase0.97positive
GWHGAAZE023454AT5G16340.1AMP-dependent synthetase and ligase family protein0.97positive
GWHGAAZE011366AT1G27170.2transmembrane receptors;ATP binding0.97positive
GWHGAAZE024321AT3G54320.3Integrase-type DNA-binding superfamily protein0.97positive
GWHGAAZE029175AT1G74420.1fucosyltransferase 30.97positive
GWHGAAZE015717AT5G65700.2Leucine-rich receptor-like protein kinase family protein0.96positive
GWHGAAZE027204AT3G20630.1ubiquitin-specific protease 140.96positive
GWHGAAZE033823AT3G14630.1cytochrome P450, family 72, subfamily A, polypeptide 90.96positive
GWHGAAZE032322----0.96positive
GWHGAAZE011165AT1G79460.1Terpenoid cyclases/Protein prenyltransferases superfamily protein0.96positive
GWHGAAZE007621AT4G35690.1Arabidopsis protein of unknown function (DUF241)0.96positive
GWHGAAZE019966AT1G02080.1transcription regulators0.95positive
GWHGAAZE015665AT3G58610.3ketol-acid reductoisomerase0.95positive
GWHGAAZE008410AT3G21700.3Ras-related small GTP-binding family protein0.95positive
GWHGAAZE007101AT3G12750.1zinc transporter 1 precursor0.95positive
GWHGAAZE023452AT5G16370.1acyl activating enzyme 50.94positive
GWHGAAZE028270AT4G33110.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.94positive
GWHGAAZE012057AT4G14400.1ankyrin repeat family protein0.94positive
GWHGAAZE032674AT4G26400.2RING/U-box superfamily protein0.93positive
GWHGAAZE030771AT5G50760.1SAUR-like auxin-responsive protein family 0.93positive
GWHGAAZE001924AT1G65590.1beta-hexosaminidase 30.93positive
GWHGAAZE033885AT1G62290.2Saposin-like aspartyl protease family protein0.92positive
GWHGAAZE002070AT5G42905.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein0.92positive
GWHGAAZE016847AT3G21760.1UDP-Glycosyltransferase superfamily protein0.92positive
GWHGAAZE019630AT5G27450.3mevalonate kinase0.92positive
GWHGAAZE032628AT3G12340.1FKBP-like peptidyl-prolyl cis-trans isomerase family protein0.92positive
GWHGAAZE013521AT1G26870.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.92positive
GWHGAAZE008266AT3G02340.1RING/U-box superfamily protein0.92positive
GWHGAAZE020679AT3G02330.1Pentatricopeptide repeat (PPR) superfamily protein0.92positive
GWHGAAZE001899AT1G65590.1beta-hexosaminidase 30.91positive
GWHGAAZE027655AT1G04110.1Subtilase family protein0.91positive
GWHGAAZE006479AT1G47750.1peroxin 11A0.91positive
GWHGAAZE007673AT2G17030.1F-box family protein with a domain of unknown function (DUF295)0.91positive
GWHGAAZE024355AT3G06240.1F-box family protein0.91positive
GWHGAAZE013107AT3G53750.1actin 30.91positive
GWHGAAZE007672AT1G49360.1F-box family protein0.91positive
GWHGAAZE032619AT4G13990.1Exostosin family protein0.9positive
GWHGAAZE013621AT4G16260.1Glycosyl hydrolase superfamily protein0.9positive
GWHGAAZE021027AT1G58390.1Disease resistance protein (CC-NBS-LRR class) family0.9positive
GWHGAAZE006246AT1G02040.1C2H2-type zinc finger family protein0.9positive
GWHGAAZE008590AT5G67160.1HXXXD-type acyl-transferase family protein0.9positive
GWHGAAZE023605AT4G19420.1Pectinacetylesterase family protein0.89positive
GWHGAAZE007632AT3G17450.1hAT dimerisation domain-containing protein0.89positive
GWHGAAZE002142AT4G35160.1O-methyltransferase family protein0.89positive
GWHGAAZE008613AT2G27170.2Structural maintenance of chromosomes (SMC) family protein0.89positive
GWHGAAZE022484AT4G25570.1Cytochrome b561/ferric reductase transmembrane protein family0.89positive
GWHGAAZE032627AT4G35320.1hypothetical protein;(source:Araport11)0.88positive
GWHGAAZE015186AT4G24380.1dihydrofolate reductase;(source:Araport11)0.88positive
GWHGAAZE023905AT5G36110.1cytochrome P450, family 716, subfamily A, polypeptide 10.88positive
GWHGAAZE031572AT3G51550.1Malectin/receptor-like protein kinase family protein0.87positive
GWHGAAZE028271AT4G33110.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.87positive
GWHGAAZE011453AT2G39210.1Major facilitator superfamily protein0.87positive
GWHGAAZE029096AT5G43690.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE031816AT5G63280.1C2H2-like zinc finger protein0.86positive
GWHGAAZE021720AT4G29090.1Ribonuclease H-like superfamily protein0.86positive
GWHGAAZE023620AT4G19410.1Pectinacetylesterase family protein0.86positive
GWHGAAZE018201AT5G17330.1glutamate decarboxylase0.86positive
GWHGAAZE011108AT4G09490.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein0.86positive


Expression profiling, GSEA and motif analysis