LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE011463

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE011463

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE011463AT1G79460.1Terpenoid cyclases/Protein prenyltransferases superfamily protein1positive
GWHGAAZE011475AT4G02780.1Terpenoid cyclases/Protein prenyltransferases superfamily protein0.96positive
GWHGAAZE019973AT2G47340.1Plant invertase/pectin methylesterase inhibitor superfamily protein0.9positive
GWHGAAZE002503AT1G28240.1Protein of unknown function (DUF616)0.9positive
GWHGAAZE023252AT3G50440.1methyl esterase 100.9positive
GWHGAAZE006232AT4G17250.1transmembrane protein;(source:Araport11)0.9positive
GWHGAAZE019971AT2G39800.4delta1-pyrroline-5-carboxylate synthase 10.9positive
GWHGAAZE002508AT3G07620.1Exostosin family protein0.89positive
GWHGAAZE026750AT5G63220.1golgi-to-ER traffic-like protein;(source:Araport11)0.88positive
GWHGAAZE022421AT1G50270.1Pentatricopeptide repeat (PPR) superfamily protein0.88positive
GWHGAAZE006234AT4G19410.2Pectinacetylesterase family protein0.88positive
GWHGAAZE003041AT1G16560.3Per1-like family protein0.88positive
GWHGAAZE007545AT1G19910.1ATPase, F0/V0 complex, subunit C protein0.88positive
GWHGAAZE016818AT2G13570.1nuclear factor Y, subunit B70.88positive
GWHGAAZE012936AT5G20920.3eukaryotic translation initiation factor 2 beta subunit0.87positive
GWHGAAZE004164AT4G20990.1alpha carbonic anhydrase 40.87positive
GWHGAAZE006419AT3G08960.1ARM repeat superfamily protein0.87positive
GWHGAAZE014385AT3G29060.1EXS (ERD1/XPR1/SYG1) family protein0.87positive
GWHGAAZE003445AT1G76340.1golgi nucleotide sugar transporter 30.87positive
GWHGAAZE024912AT2G45800.1GATA type zinc finger transcription factor family protein0.87positive
GWHGAAZE017745AT2G33040.1gamma subunit of Mt ATP synthase0.87positive
GWHGAAZE023480AT5G67550.1transmembrane protein;(source:Araport11)0.87positive
GWHGAAZE033112AT1G26690.1emp24/gp25L/p24 family/GOLD family protein0.87positive
GWHGAAZE009979AT1G56600.1galactinol synthase 20.86positive
GWHGAAZE000789AT3G11570.1TRICHOME BIREFRINGENCE-LIKE 80.86positive
GWHGAAZE012979AT3G08890.2Protein of unknown function, DUF5380.86positive
GWHGAAZE027505AT1G64320.1myosin heavy chain-related0.86positive
GWHGAAZE006894AT5G36110.1cytochrome P450, family 716, subfamily A, polypeptide 10.86positive
GWHGAAZE031182AT1G78980.1STRUBBELIG-receptor family 50.86positive
GWHGAAZE030234AT1G47670.1Transmembrane amino acid transporter family protein0.86positive
GWHGAAZE026987AT5G35700.1fimbrin-like protein 20.86positive
GWHGAAZE000495AT3G07330.1Cellulose-synthase-like C60.86positive
GWHGAAZE025434AT2G13620.1cation/hydrogen exchanger 150.86positive
GWHGAAZE006420AT3G23310.1AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein0.86positive
GWHGAAZE016552AT1G75180.3Erythronate-4-phosphate dehydrogenase family protein0.86positive
GWHGAAZE031557AT1G01050.1pyrophosphorylase 10.86positive
GWHGAAZE031681AT5G13490.2ADP/ATP carrier 20.86positive


Expression profiling, GSEA and motif analysis