LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE012320

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE012320

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE012320AT5G49620.1myb domain protein 781positive
GWHGAAZE023919AT4G20820.1FAD-binding Berberine family protein0.94positive
GWHGAAZE009115AT2G29380.1highly ABA-induced PP2C gene 30.93positive
GWHGAAZE021588AT3G06080.2Plant protein of unknown function (DUF828)0.92positive
GWHGAAZE023910AT1G30760.1FAD-binding Berberine family protein0.92positive
GWHGAAZE002340AT3G21690.1MATE efflux family protein0.91positive
GWHGAAZE023913AT1G30760.1FAD-binding Berberine family protein0.91positive
GWHGAAZE024662AT5G57500.1Galactosyltransferase family protein0.91positive
GWHGAAZE000721AT2G29380.1highly ABA-induced PP2C gene 30.91positive
GWHGAAZE006684AT1G28580.1GDSL-like Lipase/Acylhydrolase superfamily protein0.9positive
GWHGAAZE021702AT5G27600.1long-chain acyl-CoA synthetase 70.9positive
GWHGAAZE026950AT1G62300.1WRKY family transcription factor0.9positive
GWHGAAZE006487AT4G04020.1fibrillin0.9positive
GWHGAAZE000206AT3G63010.1alpha/beta-Hydrolases superfamily protein0.9positive
GWHGAAZE027547AT5G52430.1hydroxyproline-rich glycoprotein family protein0.9positive
GWHGAAZE018725AT5G64300.1GTP cyclohydrolase II0.9positive
GWHGAAZE016356AT3G53690.1RING/U-box superfamily protein0.9positive
GWHGAAZE015050AT5G65980.1Auxin efflux carrier family protein0.9positive
GWHGAAZE002724AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.9positive
GWHGAAZE010616AT3G54420.1homolog of carrot EP3-3 chitinase0.89positive
GWHGAAZE029940AT5G53380.1O-acyltransferase (WSD1-like) family protein0.89positive
GWHGAAZE025082AT4G09320.1Nucleoside diphosphate kinase family protein0.89positive
GWHGAAZE014229AT5G64460.8Phosphoglycerate mutase family protein0.89positive
GWHGAAZE006645AT5G46080.1Protein kinase superfamily protein0.89positive
GWHGAAZE022534AT5G35525.1PLAC8 family protein0.88positive
GWHGAAZE018976AT4G18530.1Protein of unknown function (DUF707)0.88positive
GWHGAAZE027185AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein0.88positive
GWHGAAZE031749AT3G63440.1cytokinin oxidase/dehydrogenase 60.88positive
GWHGAAZE002577AT1G78510.1solanesyl diphosphate synthase 10.87positive
GWHGAAZE023255AT3G50440.1methyl esterase 100.87positive
GWHGAAZE016985AT5G65110.1acyl-CoA oxidase 20.87positive
GWHGAAZE000187AT5G13170.1senescence-associated gene 290.87positive
GWHGAAZE029927AT4G34120.1Cystathionine beta-synthase (CBS) family protein0.86positive
GWHGAAZE018044AT1G74010.1Calcium-dependent phosphotriesterase superfamily protein0.86positive
GWHGAAZE031580AT1G32170.1xyloglucan endotransglucosylase/hydrolase 300.86positive
GWHGAAZE003586AT5G52570.1beta-carotene hydroxylase 20.86positive
GWHGAAZE031596AT1G32170.1xyloglucan endotransglucosylase/hydrolase 300.86positive
GWHGAAZE026945AT1G11740.1ankyrin repeat family protein0.86positive
GWHGAAZE032003AT5G17050.1UDP-glucosyl transferase 78D20.86positive
GWHGAAZE021704AT5G26340.1Major facilitator superfamily protein0.86positive
GWHGAAZE024220AT5G50080.1ethylene response factor 1100.86positive
GWHGAAZE012983AT5G01540.1lectin receptor kinase a4.10.86positive


Expression profiling, GSEA and motif analysis