LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE012805

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE012805

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE012805AT2G37690.1phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative1positive
GWHGAAZE009626AT2G20300.1Protein kinase superfamily protein0.92positive
GWHGAAZE012714AT5G53060.1RNA-binding KH domain-containing protein0.92positive
GWHGAAZE026486AT4G13970.1zinc ion binding0.92positive
GWHGAAZE026373AT5G62190.1DEAD box RNA helicase (PRH75)0.91positive
GWHGAAZE024085AT1G21700.1SWITCH/sucrose nonfermenting 3C0.91positive
GWHGAAZE004274AT1G10180.1LOW protein: exocyst complex component-like protein;(source:Araport11)0.91positive
GWHGAAZE026747AT5G13610.1Protein of unknown function (DUF155)0.91positive
GWHGAAZE013427AT1G68920.3basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.9positive
GWHGAAZE013005----0.9positive
GWHGAAZE018651AT4G33680.1Pyridoxal phosphate (PLP)-dependent transferases superfamily protein0.9positive
GWHGAAZE029646AT3G23330.1Tetratricopeptide repeat (TPR)-like superfamily protein0.89positive
GWHGAAZE002069AT3G58610.3ketol-acid reductoisomerase0.89positive
GWHGAAZE000418AT4G28760.2Protein of unknown function (DUF3741)0.89positive
GWHGAAZE024772AT3G10690.1DNA GYRASE A0.89positive
GWHGAAZE028949AT1G61870.1pentatricopeptide repeat 3360.89positive
GWHGAAZE001187AT2G27040.2Argonaute family protein0.89positive
GWHGAAZE012725AT3G49240.1Pentatricopeptide repeat (PPR) superfamily protein0.89positive
GWHGAAZE027459AT4G10760.1mRNAadenosine methylase0.89positive
GWHGAAZE029720AT3G19720.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.89positive
GWHGAAZE004367AT1G30680.1toprim domain-containing protein0.89positive
GWHGAAZE030967AT3G16290.1AAA-type ATPase family protein0.89positive
GWHGAAZE016144AT5G17410.1Spc97 / Spc98 family of spindle pole body (SBP) component0.88positive
GWHGAAZE028128AT4G31120.2SHK1 binding protein 10.88positive
GWHGAAZE011539AT1G04510.1MOS4-associated complex 3A0.88positive
GWHGAAZE007940AT1G30290.1Tetratricopeptide repeat (TPR)-like superfamily protein0.88positive
GWHGAAZE026717AT3G55200.1Cleavage and polyadenylation specificity factor (CPSF) A subunit protein0.88positive
GWHGAAZE026296AT5G23890.1GPI-anchored adhesin-like protein;(source:Araport11)0.88positive
GWHGAAZE022094AT5G18750.1DNAJ heat shock N-terminal domain-containing protein0.88positive
GWHGAAZE022730AT1G69200.1fructokinase-like 20.88positive
GWHGAAZE000299AT5G14050.1Transducin/WD40 repeat-like superfamily protein0.88positive
GWHGAAZE013703AT1G24310.1nuclear pore complex protein;(source:Araport11)0.88positive
GWHGAAZE029622AT1G09795.1ATP phosphoribosyl transferase 20.88positive
GWHGAAZE006929AT1G52310.1protein kinase family protein / C-type lectin domain-containing protein0.88positive
GWHGAAZE026016AT4G32420.3Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein0.88positive
GWHGAAZE016758AT5G23570.1XS domain-containing protein / XS zinc finger domain-containing protein-related0.88positive
GWHGAAZE004812AT4G21770.1Pseudouridine synthase family protein0.88positive
GWHGAAZE031206AT2G44640.1TRIGALACTOSYLDIACYLGLYCEROL-like protein;(source:Araport11)0.88positive
GWHGAAZE002349AT1G05180.1NAD(P)-binding Rossmann-fold superfamily protein0.88positive
GWHGAAZE016953AT5G20890.1TCP-1/cpn60 chaperonin family protein0.87positive
GWHGAAZE024328AT3G04680.2CLP-similar protein 30.87positive
GWHGAAZE028245AT5G12080.3mechanosensitive channel of small conductance-like 100.87positive
GWHGAAZE009708AT2G31320.1poly(ADP-ribose) polymerase 20.87positive
GWHGAAZE002077AT3G58610.3ketol-acid reductoisomerase0.87positive
GWHGAAZE007845AT2G22400.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.87positive
GWHGAAZE016394AT4G07410.1Transducin family protein / WD-40 repeat family protein0.87positive
GWHGAAZE031820AT3G55850.1Amidohydrolase family0.87positive
GWHGAAZE023888AT1G72040.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.87positive
GWHGAAZE013429AT1G68920.2basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.87positive
GWHGAAZE018390AT4G38890.1FMN-linked oxidoreductases superfamily protein0.87positive
GWHGAAZE002233AT1G03540.1Pentatricopeptide repeat (PPR-like) superfamily protein0.86positive
GWHGAAZE033556AT5G36950.1DegP protease 100.86positive
GWHGAAZE008285AT4G10620.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE001701AT3G22330.1putative mitochondrial RNA helicase 20.86positive
GWHGAAZE012489AT1G14850.1nucleoporin 1550.86positive
GWHGAAZE013266AT2G36250.2Tubulin/FtsZ family protein0.86positive
GWHGAAZE012783AT5G52920.1plastidic pyruvate kinase beta subunit 10.86positive
GWHGAAZE019511AT1G09010.1glycoside hydrolase family 2 protein0.86positive
GWHGAAZE014459AT5G38880.1HAUS augmin-like complex subunit;(source:Araport11)0.86positive
GWHGAAZE023557AT3G52390.1TatD related DNase0.86positive
GWHGAAZE030195AT2G16780.1Transducin family protein / WD-40 repeat family protein0.86positive
GWHGAAZE007191AT1G80270.3PENTATRICOPEPTIDE REPEAT 5960.86positive
GWHGAAZE008163AT1G51310.1transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases0.86positive
GWHGAAZE028950AT3G23780.2nuclear RNA polymerase D2A0.86positive
GWHGAAZE022764AT3G15930.1Pentatricopeptide repeat (PPR) superfamily protein0.86positive
GWHGAAZE025839AT1G77550.1tubulin-tyrosine ligases;tubulin-tyrosine ligases0.86positive
GWHGAAZE008961AT2G27590.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.86positive
GWHGAAZE009972AT2G47240.2AMP-dependent synthetase and ligase family protein0.86positive
GWHGAAZE030720AT1G29320.1Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE003376AT2G40760.1Rhodanese/Cell cycle control phosphatase superfamily protein0.86positive
GWHGAAZE012697AT1G21320.2nucleotide binding;nucleic acid binding0.86positive
GWHGAAZE016336AT4G24470.3GATA-type zinc finger protein with TIFY domain0.86positive
GWHGAAZE009987AT4G01860.2Transducin family protein / WD-40 repeat family protein0.86positive
GWHGAAZE003711AT5G53620.3RNA polymerase II degradation factor;(source:Araport11)0.86positive
GWHGAAZE023656AT1G48270.1G-protein-coupled receptor 10.86positive
GWHGAAZE016642AT1G76050.2Pseudouridine synthase family protein0.86positive
GWHGAAZE030859AT1G15910.1XH/XS domain-containing protein0.86positive
GWHGAAZE018285AT4G38430.1rho guanyl-nucleotide exchange factor 10.86positive
GWHGAAZE009367AT5G58560.1Phosphatidate cytidylyltransferase family protein0.86positive
GWHGAAZE010496AT1G56690.1Pentatricopeptide repeat (PPR) superfamily protein0.86positive
GWHGAAZE002585AT1G78560.1Sodium Bile acid symporter family0.86positive
GWHGAAZE027764AT4G16830.1Hyaluronan / mRNA binding family0.86positive
GWHGAAZE005652AT2G37020.1Translin family protein0.86positive
GWHGAAZE024432AT4G10070.1KH domain-containing protein0.86positive


Expression profiling, GSEA and motif analysis