LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE013344

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE013344

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE013344AT3G22270.1Topoisomerase II-associated protein PAT11positive
GWHGAAZE010089ATMG00410.1ATPase subunit 6-1-0.64negative
GWHGAAZE010082AT2G07689.1NADH-Ubiquinone/plastoquinone (complex I) protein-0.64negative
GWHGAAZE010040ATMG00070.1NADH dehydrogenase subunit 9-0.64negative
GWHGAAZE010021AT2G07689.1NADH-Ubiquinone/plastoquinone (complex I) protein-0.63negative
GWHGAAZE010024ATMG00220.1apocytochrome b-0.63negative
GWHGAAZE010055ATMG00070.1NADH dehydrogenase subunit 9-0.62negative
GWHGAAZE010110ATMG00270.1NADH dehydrogenase 6-0.62negative
GWHGAAZE010090ATMG00270.1NADH dehydrogenase 6-0.61negative
GWHGAAZE010046ATMG00730.1cytochrome c oxidase subunit 3-0.61negative
GWHGAAZE010035AT2G07599.1hypothetical protein;(source:Araport11)-0.61negative
GWHGAAZE010062ATMG00580.1NADH dehydrogenase subunit 4-0.6negative
GWHGAAZE010049ATMG00480.1Plant mitochondrial ATPase, F0 complex, subunit 8 protein-0.6negative
GWHGAAZE010103AT2G07599.1hypothetical protein;(source:Araport11)-0.6negative
GWHGAAZE010111ATMG00290.1mitochondrial ribosomal protein S4-0.6negative
GWHGAAZE010050ATMG00730.1cytochrome c oxidase subunit 3-0.6negative
GWHGAAZE010087ATMG00960.1Cytochrome C assembly protein-0.6negative
GWHGAAZE010209ATCG00360.1Tetratricopeptide repeat (TPR)-like superfamily protein-0.58negative
GWHGAAZE010054ATMG00110.1cytochrome C biogenesis 206-0.58negative
GWHGAAZE010094ATMG00900.1cytochrome C biogenesis 256-0.57negative
GWHGAAZE010027-----0.56negative
GWHGAAZE010031ATMG00580.1NADH dehydrogenase subunit 4-0.56negative
GWHGAAZE010022ATMG00210.1ribosomal protein L5-0.56negative
GWHGAAZE010084AT2G07698.1ATPase, F1 complex, alpha subunit protein-0.56negative


Expression profiling, GSEA and motif analysis