LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE015024

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE015024

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE015024AT4G35590.1RWP-RK domain-containing protein1positive
GWHGAAZE029737AT2G15430.1DNA-directed RNA polymerase family protein0.98positive
GWHGAAZE029906AT5G10360.1Ribosomal protein S6e0.97positive
GWHGAAZE015025AT4G35590.1RWP-RK domain-containing protein0.96positive
GWHGAAZE032266AT3G07870.1F-box and associated interaction domains-containing protein0.93positive
GWHGAAZE025647AT1G45688.1CC1 is a plant specific gene that interacts with with the cellulose synthase complex and microtubules. It appears to play a role in localizing CESA to the membrane, microtuble dynamics , particularly during salt stress.0.92positive
GWHGAAZE024649AT2G24300.1Calmodulin-binding protein0.92positive
GWHGAAZE033307AT1G48940.1early nodulin-like protein 60.92positive
GWHGAAZE006967AT2G04032.1zinc transporter 7 precursor0.92positive
GWHGAAZE013254AT2G24960.1Myb/SANT-like DNA-binding domain protein;(source:Araport11)0.92positive
GWHGAAZE016672AT1G20650.1Protein kinase superfamily protein0.91positive
GWHGAAZE023035AT5G14230.1ankyrin;(source:Araport11)0.91positive
GWHGAAZE013679AT1G24480.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.91positive
GWHGAAZE006909AT1G30840.2purine permease 40.91positive
GWHGAAZE002811AT4G21750.2Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein0.91positive
GWHGAAZE000606AT1G06950.1translocon at the inner envelope membrane of chloroplasts 1100.9positive
GWHGAAZE029092AT3G45070.1P-loop containing nucleoside triphosphate hydrolases superfamily protein0.9positive
GWHGAAZE029723AT5G64570.1beta-D-xylosidase 40.9positive
GWHGAAZE007767AT4G39330.1cinnamyl alcohol dehydrogenase 90.9positive
GWHGAAZE005033AT5G03250.1Phototropic-responsive NPH3 family protein0.9positive
GWHGAAZE003378AT2G38560.1transcript elongation factor IIS0.89positive
GWHGAAZE021804AT4G12560.2F-box and associated interaction domains-containing protein0.89positive
GWHGAAZE020356AT1G22760.1poly(A) binding protein 30.89positive
GWHGAAZE000796AT2G28680.1RmlC-like cupins superfamily protein0.89positive
GWHGAAZE029362AT5G64630.2Transducin/WD40 repeat-like superfamily protein0.89positive
GWHGAAZE016344AT5G64410.1oligopeptide transporter 40.89positive
GWHGAAZE028411AT4G29480.1Mitochondrial ATP synthase subunit G protein0.89positive
GWHGAAZE024994AT1G62770.1Plant invertase/pectin methylesterase inhibitor superfamily protein0.89positive
GWHGAAZE032205AT5G57810.1tetraspanin150.89positive
GWHGAAZE005498AT2G39770.2Glucose-1-phosphate adenylyltransferase family protein0.88positive
GWHGAAZE003422AT5G51220.1ubiquinol-cytochrome C chaperone family protein0.88positive
GWHGAAZE003574AT4G25630.1fibrillarin 20.87positive
GWHGAAZE020205AT2G28930.2protein kinase 1B0.87positive
GWHGAAZE022616AT1G10880.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein0.87positive
GWHGAAZE020231AT2G07180.2Protein kinase superfamily protein0.87positive
GWHGAAZE020466AT5G27660.1Trypsin family protein with PDZ domain0.87positive
GWHGAAZE021782AT3G06240.1F-box family protein0.87positive
GWHGAAZE032632AT1G33530.1F-box family protein0.87positive
GWHGAAZE007249----0.87positive
GWHGAAZE024071AT1G21750.1PDI-like 1-10.87positive
GWHGAAZE020230AT2G28930.2protein kinase 1B0.87positive
GWHGAAZE020873AT1G79800.1early nodulin-like protein 70.87positive
GWHGAAZE003055AT5G27260.1Myb/SANT-like DNA-binding domain protein;(source:Araport11)0.87positive
GWHGAAZE021009AT5G57035.1U-box domain-containing protein kinase family protein0.86positive
GWHGAAZE021510AT4G12560.2F-box and associated interaction domains-containing protein0.86positive
GWHGAAZE026282AT3G06240.1F-box family protein0.86positive
GWHGAAZE022452AT3G48750.1cell division control 20.86positive
GWHGAAZE030774AT1G32583.1A microRNA MIR400 is derived from the first intron of At1g32583 in the 5'UTR. A stress-induced alternative splicing event in At1g32583 resulted in greater accumulation of miR400 primary transcripts and a low level of mature miR400.0.86positive
GWHGAAZE018409AT1G75540.1salt tolerance homolog20.86positive
GWHGAAZE023533AT4G19010.1AMP-dependent synthetase and ligase family protein0.86positive
GWHGAAZE009635AT2G20370.1Exostosin family protein0.86positive
GWHGAAZE010572AT4G19940.1F-box and associated interaction domains-containing protein0.86positive


Expression profiling, GSEA and motif analysis