LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE018060

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE018060

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE018060ATCG00490.1ribulose-bisphosphate carboxylases1positive
GWHGAAZE023172AT1G55325.1RNA polymerase II transcription mediators1positive
GWHGAAZE015546ATMG01250.1RNA-directed DNA polymerase (reverse transcriptase)1positive
GWHGAAZE011619AT4G29090.1Ribonuclease H-like superfamily protein1positive
GWHGAAZE032280AT4G19510.2Disease resistance protein (TIR-NBS-LRR class)1positive
GWHGAAZE021811AT2G26640.13-ketoacyl-CoA synthase 111positive
GWHGAAZE009673AT3G54220.1GRAS family transcription factor1positive
GWHGAAZE002388AT1G78750.1F-box/RNI-like superfamily protein1positive
GWHGAAZE002624AT2G25010.1Aminotransferase-like, plant mobile domain family protein1positive
GWHGAAZE030371AT1G76420.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein1positive
GWHGAAZE029629----1positive
GWHGAAZE009008AT1G48120.1hydrolases;protein serine/threonine phosphatases1positive
GWHGAAZE003267AT1G36280.1L-Aspartase-like family protein1positive
GWHGAAZE023486AT3G09510.1Ribonuclease H-like superfamily protein1positive
GWHGAAZE021859AT3G49450.1F-box and associated interaction domains-containing protein1positive
GWHGAAZE028465AT3G14090.1exocyst subunit exo70 family protein D31positive
GWHGAAZE009339AT5G58784.1Undecaprenyl pyrophosphate synthetase family protein1positive
GWHGAAZE007143AT1G69500.1cytochrome P450, family 704, subfamily B, polypeptide 11positive
GWHGAAZE019595----1positive
GWHGAAZE011469AT3G52970.1cytochrome P450, family 76, subfamily G, polypeptide 11positive
GWHGAAZE022132AT2G02520.1RNA-directed DNA polymerase (reverse transcriptase)-related family protein1positive
GWHGAAZE002281AT1G11300.1protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding1positive
GWHGAAZE004357AT5G18636.1Ta11-like non-LTR retrotransposon;(source:Araport11)1positive
GWHGAAZE011345AT3G23320.1Polynucleotidyl transferase, ribonuclease H-like superfamily protein1positive
GWHGAAZE028313AT2G44810.1alpha/beta-Hydrolases superfamily protein1positive
GWHGAAZE031340AT2G01050.1zinc ion binding;nucleic acid binding1positive
GWHGAAZE003452----1positive
GWHGAAZE033739AT5G11380.11-deoxy-D-xylulose 5-phosphate synthase 31positive
GWHGAAZE011434AT2G17920.1nucleic acid binding;zinc ion binding0.98positive
GWHGAAZE028312AT1G11390.1Protein kinase superfamily protein0.97positive
GWHGAAZE030007AT4G35970.1ascorbate peroxidase 50.97positive
GWHGAAZE028882AT5G54810.1tryptophan synthase beta-subunit 10.94positive
GWHGAAZE032386AT3G02645.1Plant protein of unknown function (DUF247)0.94positive
GWHGAAZE033813----0.94positive
GWHGAAZE020695----0.93positive
GWHGAAZE020696AT3G14460.1LRR and NB-ARC domains-containing disease resistance protein0.93positive
GWHGAAZE008714AT1G17930.1Aminotransferase-like, plant mobile domain family protein0.93positive
GWHGAAZE012266AT2G22440.1non-LTR retroelement reverse transcriptase;(source:Araport11)0.91positive
GWHGAAZE003498AT2G01050.1zinc ion binding;nucleic acid binding0.89positive
GWHGAAZE028228AT3G14470.1NB-ARC domain-containing disease resistance protein0.89positive
GWHGAAZE029630AT1G27320.1histidine kinase 30.89positive
GWHGAAZE009562----0.88positive
GWHGAAZE010436----0.88positive
GWHGAAZE016989AT4G35240.2Protein of unknown function (DUF630 and DUF632)0.86positive


Expression profiling, GSEA and motif analysis