LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE025736

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE025736

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE025736AT4G29190.1Zinc finger C-x8-C-x5-C-x3-H type family protein1positive
GWHGAAZE033335AT4G14605.1Mitochondrial transcription termination factor family protein0.91positive
GWHGAAZE013852AT1G76110.1HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain0.9positive
GWHGAAZE026921AT3G22104.1Phototropic-responsive NPH3 family protein0.9positive
GWHGAAZE030239AT5G22800.1Alanyl-tRNA synthetase, class IIc0.9positive
GWHGAAZE020638AT3G02645.1Plant protein of unknown function (DUF247)0.89positive
GWHGAAZE015380AT4G08850.1Leucine-rich repeat receptor-like protein kinase family protein0.89positive
GWHGAAZE012178AT5G18600.1Thioredoxin superfamily protein0.89positive
GWHGAAZE020627AT3G02645.1Plant protein of unknown function (DUF247)0.89positive
GWHGAAZE003787AT3G12750.1zinc transporter 1 precursor0.89positive
GWHGAAZE020631AT3G02645.1Plant protein of unknown function (DUF247)0.88positive
GWHGAAZE026648AT2G39730.1rubisco activase0.88positive
GWHGAAZE015927AT1G34060.1Pyridoxal phosphate (PLP)-dependent transferases superfamily protein0.88positive
GWHGAAZE024756AT5G58140.2phototropin 20.88positive
GWHGAAZE011644AT1G75900.1GDSL-like Lipase/Acylhydrolase superfamily protein0.88positive
GWHGAAZE011834AT5G26340.1Major facilitator superfamily protein0.88positive
GWHGAAZE025317AT5G33320.1Glucose-6-phosphate/phosphate translocator-related0.88positive
GWHGAAZE032385AT3G02645.1Plant protein of unknown function (DUF247)0.88positive
GWHGAAZE015720AT5G63930.1Leucine-rich repeat protein kinase family protein0.88positive
GWHGAAZE015140AT5G37600.1glutamine synthase clone R10.88positive
GWHGAAZE027640AT4G22890.3PGR5-LIKE A0.88positive
GWHGAAZE006022AT5G41410.1POX (plant homeobox) family protein0.87positive
GWHGAAZE012986AT1G28960.4nudix hydrolase homolog 150.87positive
GWHGAAZE022962AT3G26570.2phosphate transporter 2;10.87positive
GWHGAAZE023270AT2G45550.1cytochrome P450, family 76, subfamily C, polypeptide 40.87positive
GWHGAAZE032388AT3G02645.1Plant protein of unknown function (DUF247)0.87positive
GWHGAAZE027019AT4G13500.1transmembrane protein;(source:Araport11)0.87positive
GWHGAAZE023276AT2G45550.1cytochrome P450, family 76, subfamily C, polypeptide 40.87positive
GWHGAAZE033425AT3G02645.1Plant protein of unknown function (DUF247)0.87positive
GWHGAAZE016047AT4G37925.1subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex0.87positive
GWHGAAZE027670AT1G62960.1ACC synthase 100.87positive
GWHGAAZE005376AT1G07030.1Mitochondrial substrate carrier family protein0.87positive
GWHGAAZE007663AT2G17570.1Undecaprenyl pyrophosphate synthetase family protein0.87positive
GWHGAAZE023820AT2G26080.1glycine decarboxylase P-protein 20.87positive
GWHGAAZE007848----0.87positive
GWHGAAZE027843AT2G35260.1CAAX protease self-immunity protein;(source:Araport11)0.87positive
GWHGAAZE029709AT1G43670.1Inositol monophosphatase family protein0.87positive
GWHGAAZE007904AT5G06900.1cytochrome P450, family 93, subfamily D, polypeptide 10.86positive
GWHGAAZE010671AT2G13360.2alanine:glyoxylate aminotransferase0.86positive
GWHGAAZE020628AT3G02645.1Plant protein of unknown function (DUF247)0.86positive
GWHGAAZE032331AT1G22150.1sulfate transporter 1;30.86positive
GWHGAAZE002537AT3G14420.2Aldolase-type TIM barrel family protein0.86positive
GWHGAAZE032039AT4G10120.2Sucrose-phosphate synthase family protein0.86positive
GWHGAAZE003268AT3G55800.1sedoheptulose-bisphosphatase0.86positive
GWHGAAZE026528AT2G40400.2Protein of unknown function (DUF399 and DUF3411)0.86positive
GWHGAAZE012502----0.86positive
GWHGAAZE004199AT2G30150.1UDP-Glycosyltransferase superfamily protein0.86positive
GWHGAAZE015943AT1G80830.1natural resistance-associated macrophage protein 10.86positive


Expression profiling, GSEA and motif analysis