Arabidopsis Gene Coexpression Network Visualizer

This database contains Arabidopsis gene network, organized by coexpression relationships. The data are calculated using fuzzy K-means and graphical gaussian models, by Professor Hans J. Bohnert's lab.
Please refer to this paper for more details: Ma S, et al., An Arabidopsis gene network based on the graphical Gaussian model, Genome Research, 2007

Because of security reason, this web server was moved into local intranet and please click HERE to get full function.
Input genes
Edge limit


  • Both gene alias (AP1) or locus name (AT1G69120) can be used to search this database.
  • Edge limit means to what extent the search would be done.
    "limit=1" means to find all genes directly associated with input gene(s),
    "limit=2" means to find all directly and 1st-level-indirectly associated genes,
    and "limit=3" contains "limit=2" plus 2nd-level-indirectly associated genes.
    Note that under "limit=3" the returned network will usually be very large and you would have to wait for a while.
    Also note that edge limit will only apply when number of input gene does not exceed 2 (so as not to over-burden the server).
  • The Arabidopsis gene information has been updated to TAIR version 8, on Sep 3, 2008.

This server is created / maintained by Zhou Xin.
Su Zhen's lab