PH01000002G2380's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT4G18905 : 4.30E-59
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000002
Strand: -
| Region | Start | End |
| gene | 1681515 | 1687354 |
| mRNA | 1681515 | 1687354 |
| exon | 1681515 | 1681557 |
| exon | 1681649 | 1681727 |
| exon | 1682705 | 1682803 |
| exon | 1683246 | 1683320 |
| exon | 1683598 | 1683660 |
| exon | 1684445 | 1684680 |
| exon | 1684810 | 1684933 |
| exon | 1685542 | 1685621 |
| exon | 1685733 | 1685929 |
| exon | 1686020 | 1687354 |
| CDS | 1681520 | 1681557 |
| CDS | 1681649 | 1681727 |
| CDS | 1682705 | 1682803 |
| CDS | 1683246 | 1683320 |
| CDS | 1683598 | 1683660 |
| CDS | 1684445 | 1684680 |
| CDS | 1684810 | 1684933 |
| CDS | 1685542 | 1685621 |
| CDS | 1685733 | 1685929 |
| CDS | 1686020 | 1686138 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.