Annotation of co-expression genes

PH01000072G0630's details annotation

1.Annotation

ICBR annotation: signal recognition particle 54 kDa protein, putative, expressed

Blast result AT1G48900 : 0.00E+00
Blast annotation: Signal recognition particle, SRP54 subunit protein

2.Location

Scaffold: PH01000072
Strand: +

RegionStartEnd
gene490005498832
mRNA490005498832
exon490005491323
exon491426491525
exon493658493811
exon493895494045
exon494131494279
exon496563496663
exon496737496894
exon497020497134
exon497961498832
CDS491093491323
CDS491426491525
CDS493658493811
CDS493895494045
CDS494131494279
CDS496563496663
CDS496737496894
CDS497020497134
CDS497961498316

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02881.18SRP54_N683
PF00448.21SRP54102296
PF02978.18SRP_SPB328427

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exportsignal recognition particle subunit SRP54ko03060K03106

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:00083127S RNA binding
GO:0017111nucleoside-triphosphatase activity
GO:0048500signal recognition particle

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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