Annotation of co-expression genes

PH01000081G1440's details annotation

1.Annotation

ICBR annotation: ABC-2 type transporter domain containing protein, expressed

Blast result AT5G06530 : 0.00E+00
Blast annotation: ABC-2 type transporter family protein

2.Location

Scaffold: PH01000081
Strand: +

RegionStartEnd
gene873946881560
mRNA873946881560
exon873946876660
exon876774876844
exon876967877193
exon878120878275
exon878367878550
exon878623878943
exon879030879317
exon879439879723
exon879866879973
exon880125881560
CDS876270876660
CDS876774876844
CDS876967877193
CDS878120878275
CDS878367878550
CDS878623878943
CDS879030879317
CDS879439879723
CDS879866879973
CDS880125880346

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran172324
PF01061.23ABC2_membrane496704

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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