PH01000104G1120's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT1G09410 : 5.00E-123
Blast annotation: pentatricopeptide (PPR) repeat-containing protein
2.Location
Scaffold: PH01000104
Strand: -
| Region | Start | End |
| gene | 818007 | 821304 |
| mRNA | 818007 | 821304 |
| exon | 818007 | 819796 |
| exon | 820515 | 821304 |
| CDS | 818832 | 819796 |
| CDS | 820515 | 821238 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 22 | 45 |
| PF01535.19 | PPR | 79 | 107 |
| PF12854.6 | PPR_1 | 138 | 166 |
| PF01535.19 | PPR | 172 | 202 |
| PF13041.5 | PPR_2 | 231 | 278 |
| PF01535.19 | PPR | 306 | 332 |
| PF13041.5 | PPR_2 | 333 | 379 |
| PF01535.19 | PPR | 408 | 431 |
| PF01535.19 | PPR | 476 | 502 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.