PH01000210G0870's details annotation
1.Annotation
ICBR annotation: CCR4-NOT transcription factor, putative, expressed
Blast result AT5G59710 : 2.00E-159
Blast annotation: VIRE2 interacting protein 2
2.Location
Scaffold: PH01000210
Strand: -
| Region | Start | End |
| gene | 619388 | 631731 |
| mRNA | 619388 | 631731 |
| exon | 619388 | 620096 |
| exon | 620587 | 620676 |
| exon | 620788 | 620858 |
| exon | 620945 | 621089 |
| exon | 621446 | 621487 |
| exon | 621574 | 621626 |
| exon | 621767 | 622198 |
| exon | 622379 | 622456 |
| exon | 623417 | 623463 |
| exon | 624433 | 624534 |
| exon | 624610 | 624816 |
| exon | 625821 | 626181 |
| exon | 626385 | 626548 |
| exon | 626669 | 626738 |
| exon | 627333 | 627399 |
| exon | 629474 | 631731 |
| CDS | 619988 | 620096 |
| CDS | 620587 | 620676 |
| CDS | 620788 | 620858 |
| CDS | 620945 | 621089 |
| CDS | 621446 | 621487 |
| CDS | 621574 | 621626 |
| CDS | 621767 | 622198 |
| CDS | 622379 | 622456 |
| CDS | 623417 | 623463 |
| CDS | 624433 | 624534 |
| CDS | 624610 | 624816 |
| CDS | 625821 | 626181 |
| CDS | 626385 | 626548 |
| CDS | 626669 | 626738 |
| CDS | 627333 | 627399 |
| CDS | 629474 | 629562 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04153.17 | NOT2_3_5 | 507 | 627 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 2 | ko03018 | K12605 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.