PH01000299G0150's details annotation
1.Annotation
ICBR annotation: copine, putative, expressed
Blast result AT1G67800 : 4.80E-70
Blast annotation: Copine (Calcium-dependent phospholipid-binding protein) family
2.Location
Scaffold: PH01000299
Strand: -
| Region | Start | End |
| gene | 101004 | 110996 |
| mRNA | 101004 | 110996 |
| exon | 101004 | 102816 |
| exon | 104388 | 104469 |
| exon | 104618 | 104674 |
| exon | 104775 | 105017 |
| exon | 105142 | 105208 |
| exon | 105345 | 105421 |
| exon | 107780 | 107874 |
| exon | 107959 | 108072 |
| exon | 108362 | 108446 |
| exon | 109022 | 109124 |
| exon | 109680 | 110079 |
| exon | 110501 | 110996 |
| CDS | 102611 | 102816 |
| CDS | 104388 | 104469 |
| CDS | 104618 | 104674 |
| CDS | 104775 | 105017 |
| CDS | 105142 | 105208 |
| CDS | 105345 | 105421 |
| CDS | 107780 | 107874 |
| CDS | 107959 | 108072 |
| CDS | 108362 | 108446 |
| CDS | 109022 | 109124 |
| CDS | 109680 | 110079 |
| CDS | 110501 | 110504 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000504 | cytoplasm, microtubule associated complex, Pyruvate_metabolism Fatty_acid_biosynthesis Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001740 | Glycine,_serine_and_threonine_metabolism aminomethyltransferase activity, aspartate kinase activity, Biotin_metabolism Lysine_biosynthesis glycine catabolic process, cellular amino acid biosynthetic process, Fatty_acid_biosynthesis Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07002.15 | Copine | 197 | 355 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.